Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  255 bits (652), Expect = 2e-72
 Identities = 154/432 (35%), Positives = 226/432 (52%), Gaps = 12/432 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  LE   +   TP+Q  A+P +L G+D+   AQTGTGKT  F       
Sbjct: 3   FASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQR 62

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           L    A    A    RA+++ PTRELA Q+         +  L+    YGG S + Q+  
Sbjct: 63  LTMEGAKV--ASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L+ G+D+L+ T GR++D Y+Q     N +QA+VLDEADRM DLGF  ++  LF  +P  K
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALP--K 178

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
            R  +LFSAT S  ++++A E + +P  V V P       +++ L     + K  L   L
Sbjct: 179 KRQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHL 238

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           + E+   + ++F  T+   +Q+   L A       + GD PQ  R R LE+F  G+V +L
Sbjct: 239 LAEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVL 298

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VATDVAARGL I  +  V N+DLP   EDYVHRIGRTGRAGA+G ++S    +    L A
Sbjct: 299 VATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAA 358

Query: 371 IESYIEHAIPTSDYDPSALLTDLPAPLS------LRSSPQQRRTNTAGSRNSNNGGNRKP 424
           IE+ I   +P   +D    + D   P +      ++   + ++   AG +   + GN   
Sbjct: 359 IETLINQVLPR--HDELGFVPDHRVPTTTLGGQIIKKPKKPKKPKDAGGKGKIHLGNWFD 416

Query: 425 QQRRPRAPRPKK 436
           +  +P A   +K
Sbjct: 417 ESEKPNAKPIRK 428