Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  269 bits (687), Expect = 2e-76
 Identities = 159/434 (36%), Positives = 233/434 (53%), Gaps = 11/434 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   +   +E  G+   TP+Q  A+P +L G+D+   AQTGTGKT  F       
Sbjct: 3   FASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLEL 62

Query: 71  LLTT--PAAEGR-AETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQ 127
           L     P  E R    QPR +++ PTRELA Q+    +       LK+   +GG   + Q
Sbjct: 63  LFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMNPQ 122

Query: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
           +  +  G+D+L+   GR++D   Q+  +L+H++ +VLDEADRM D+GFI D++ +  ++P
Sbjct: 123 IQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLP 182

Query: 188 EPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALL 247
               R N+LFSAT S  + +LA + ++NPE + V P   T  RI++ +F  +  HK ALL
Sbjct: 183 AK--RQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL 240

Query: 248 QTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDV 307
             LI +   ++ ++F  TKH   ++  +L         + G+  Q  R + L  F    V
Sbjct: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV 300

Query: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
            ILVATD+AARGL I Q+ HV N++LP+  EDYVHRIGRTGRAG SG +IS    +    
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 368 LPAIESYIEHAIPTSD---YDPSALLTDLPAPLSLRS-SPQQRRTNTAGSRN--SNNGGN 421
           L  IE   +  IP  D   +D SA+  + P     R   PQ+      G RN  +  G  
Sbjct: 361 LKGIERMTKQRIPEGDLMGFDASAIEAEKPEVREPRQPRPQRGEGKARGERNKPAEKGAE 420

Query: 422 RKPQQRRPRAPRPK 435
           +K + RR ++   K
Sbjct: 421 QKERNRRSQSKSRK 434