Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  318 bits (815), Expect = 2e-91
 Identities = 174/386 (45%), Positives = 236/386 (61%), Gaps = 2/386 (0%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           +F DF L P+++  +   GF YCTPIQA  L   L+G+D  G+AQTGTGKT AFL +T  
Sbjct: 90  RFHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGRDAIGRAQTGTGKTAAFLISTIT 149

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            LL TP  + R   +PRA+I+APTREL +QI NDA  L   T L      GG  +DKQL 
Sbjct: 150 QLLDTPPPKDRYMGEPRALIIAPTRELVVQIANDALDLTKYTNLNVMSFVGGMDFDKQLK 209

Query: 130 KLQSGV-DILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
           +L+S   DIL+ T GR++DF ++   +L+ ++ +VLDEADRM D+GFI  +R + R+ P 
Sbjct: 210 QLESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 269

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248
             +R  +LFSAT +  V  LA +    P  V +EPE      +++ +F  +   K  LL 
Sbjct: 270 KSERQTLLFSATFTDDVMNLAQQWTTTPAVVEIEPENVASDTVEQHVFAVAGSDKYKLLY 329

Query: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308
            LI +    R ++FAN K    +I   L  D      ++GDVPQ KR R LE F +G + 
Sbjct: 330 NLITQNDWTRVMVFANRKDEVRRIEERLTRDGISAAQMSGDVPQHKRIRTLEGFREGKIR 389

Query: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368
           +LVATDVA RG+H+  ++HV N+ LP+D +DYVHRIGRTGRAG SG SISFA E+ A  L
Sbjct: 390 VLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAFAL 449

Query: 369 PAIESYIEHAIPTSDYDPSALLTDLP 394
           P IE+ I   I   +  P+ LL  +P
Sbjct: 450 PPIEALIGRKI-QCEMPPAELLAPVP 474