Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  248 bits (632), Expect = 4e-70
 Identities = 140/348 (40%), Positives = 202/348 (58%), Gaps = 10/348 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  G+   V+  +   G+   +PIQ+ A+PV+L G D+ GQAQTGTGKT AF     + 
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAST-GLKAALAYGGESYDKQLA 129
           +   PA   R E Q  A+I+APTRELA+Q+    E       GL     YGG     QL 
Sbjct: 68  I--DPA---RKEVQ--ALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLK 120

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
            ++ G  +++ T GR++D   +    L+ I+ +VLDEAD M  LGF+ D+  +F  MPE 
Sbjct: 121 AIRQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPE- 179

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
             R  +LFSATL + ++ +A +H+  P+H+ +  + +T  RI++       + K+  +  
Sbjct: 180 -SRQTVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLR 238

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           L+E E  D  I F  TK     + A L A  ++   L GD+ Q +RER++E    G +DI
Sbjct: 239 LLEVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDI 298

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357
           +VATDVAARGL + ++THVFN D+P D E YVHRIGRTGRAG  G ++
Sbjct: 299 VVATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRAL 346