Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 485 a.a., Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  300 bits (767), Expect = 9e-86
 Identities = 164/382 (42%), Positives = 230/382 (60%), Gaps = 2/382 (0%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           +F DF L P+++  ++  GF YCTPIQA  L   L G+D  G+AQTGTGKT AFL +   
Sbjct: 97  RFHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIE 156

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            L  TP    R   +PRA+I+APTREL +QI  DA  L   T L      GG  +DKQL 
Sbjct: 157 QLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 216

Query: 130 KLQSG-VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
           +L++   DIL+ T GR++DF ++   +L+ ++ +VLDEADRM D+GFI  +R + R+ P 
Sbjct: 217 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 276

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248
             +R  +LFSAT +  V  LA +   +P  V +E        +++ ++  +   K  LL 
Sbjct: 277 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 336

Query: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308
            L+ +   +R ++FAN K    +I   L  D      L+GDVPQ KR + LE F +G + 
Sbjct: 337 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 396

Query: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368
           +LVATDVA RG+HI  ++HV N+ LP+  +DYVHRIGRTGRAGA G SISFA E+ +  L
Sbjct: 397 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQL 456

Query: 369 PAIESYIEHAIPTSDYDPSALL 390
           PAIE  +   I + +  P+ LL
Sbjct: 457 PAIEEKLGRKI-SCETPPTHLL 477