Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  262 bits (670), Expect = 2e-74
 Identities = 161/451 (35%), Positives = 236/451 (52%), Gaps = 30/451 (6%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  +E  G+   TP+Q  A+P +L G+D+   AQTGTGKT  F       
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 71  LLTTPA---AEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQ 127
           L        ++     QPR +++ PTRELA Q+    +         +A  +GG   + Q
Sbjct: 63  LFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQ 122

Query: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
           +  +  GVD+L+   GR++D   Q   +L+H++ +VLDEADRM D+GF+ D++ +  R+P
Sbjct: 123 VQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLP 182

Query: 188 EPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALL 247
               R N+LFSAT S  +  LA + ++NPE + V P   T  RI++ +F  +  HK +LL
Sbjct: 183 AK--RQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL 240

Query: 248 QTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDV 307
             LI     ++ ++F  TKH   ++  +L         + G+  Q  R + L  F  GDV
Sbjct: 241 AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV 300

Query: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
            I+VATD+AARGL I Q+ HV N++LP+  EDYVHRIGRTGRAG SG +IS    +    
Sbjct: 301 RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 368 LPAIESYIEHAIPTSD---YDPSALLTDLPAPLSLRSSPQQRRTNTA----GSRNSNNGG 420
           L +IE   +  I   D   +D +A+  + P    +R  P  R +  A    G  + NNGG
Sbjct: 361 LKSIERMTKQKIADGDLMGFDITAVEAEKP---EVRERPDVRNSRGARPARGDGDKNNGG 417

Query: 421 NR---------KPQ------QRRPRAPRPKK 436
            R         KP       +R  R PR KK
Sbjct: 418 RRDKGKDKGKEKPAAASATGERPARQPREKK 448