Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  261 bits (668), Expect = 3e-74
 Identities = 162/431 (37%), Positives = 235/431 (54%), Gaps = 15/431 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F + GL   ++  L   GF   TPIQA A+P++L   D+ G AQTGTGKT AF       
Sbjct: 4   FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63

Query: 71  LLTTPAAEGRAETQP--RAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQL 128
           L+    A+GR       RA+++APTREL  QI  + +  +  + LK  L  GG S +KQ 
Sbjct: 64  LV----ADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQT 119

Query: 129 AKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
            +L  GVDIL+ T GR++D   ++   L   + +VLDEAD+M DLGFI D+R + + +P 
Sbjct: 120 EQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVP- 178

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEEL-FYPSNEHKMALL 247
            K+R  +LFSAT+   + ELA E++ +P  V V P  K   ++++ + F P  + K  +L
Sbjct: 179 -KNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTIL 237

Query: 248 QTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDV 307
           +  +       ++IF+ TKH  E++  HL     +   + G+  Q +RER L+ F  G++
Sbjct: 238 KQTLTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEI 297

Query: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
            +LVATDVAARG+ IP VTHV+NYDLP+  + YVHRIGRT R G  G +I+F   +    
Sbjct: 298 RVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRL 357

Query: 368 LPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQR 427
           L  IE  +   I  +  +  A   D   P   R      +    G    N  G R   Q 
Sbjct: 358 LRDIEKLMGIQIAVASGEAPA---DQARPSKGRGGRGNGQPRGNGQPRGNGAGQR---QG 411

Query: 428 RPRAPRPKKEA 438
            PR  RP+++A
Sbjct: 412 GPRRDRPQRQA 422