Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., ATP-dependent RNA helicase RhlB (RefSeq) from Shewanella amazonensis SB2B

 Score =  566 bits (1459), Expect = e-166
 Identities = 286/438 (65%), Positives = 335/438 (76%), Gaps = 9/438 (2%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           M +TH+T+ KFAD  L  +V   L + GF +CTPIQAL+LPVLL  +DIAGQAQTGTGKT
Sbjct: 1   MSETHLTQQKFADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKT 60

Query: 61  LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
           LAFL ATFNHLLTTP  E R   QPRAI+MAPTRELAIQI  DA  L   +GLK  + YG
Sbjct: 61  LAFLVATFNHLLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYG 120

Query: 121 GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
           GE Y+ Q   L  GVD+LIGTTGRIID+ +Q V NL  IQAVVLDEADRMFDLGFIKDIR
Sbjct: 121 GEGYEAQRKVLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIR 180

Query: 181 FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN 240
           FLF RMP  K+RLNMLFSATLS +VQELA++HMN+P  V + PE+KT   I+EE+FYPS 
Sbjct: 181 FLFNRMPGAKERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSM 240

Query: 241 EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
           E K+ LL +LIEE+WP++AI+FANTK++CE +WA L AD HRVGLLTGDVPQKKR +ILE
Sbjct: 241 EDKLKLLHSLIEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILE 300

Query: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
           QFTQ ++DILVATDVAARGLHI  V+HV+NYDLPDDCEDYVHRIGRTGRAG  G S+SFA
Sbjct: 301 QFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA 360

Query: 361 CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRN--SNN 418
           CEEYA+NLPAIE YI+H+IP + YD  AL+ D+P P+ +   P       AG RN    N
Sbjct: 361 CEEYALNLPAIEDYIKHSIPVTSYDRDALI-DIPPPVKIHRKPH------AGGRNLRDRN 413

Query: 419 GGNRKPQQRRPRAPRPKK 436
           G  R     R  + RP +
Sbjct: 414 GSPRPSGSHRSGSGRPPR 431