Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  260 bits (665), Expect = 6e-74
 Identities = 155/431 (35%), Positives = 234/431 (54%), Gaps = 16/431 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  L+ KG+   +PIQA A+PV+L G+D+   AQTGTGKT  F       
Sbjct: 3   FASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLLEL 62

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           L  T  A  +   Q RA+I+ PTRELA QI ++         LK+ + +GG     Q+  
Sbjct: 63  LSQTQKAGPK---QVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITT 119

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L+ G+DIL+ T GR++D ++Q   + + ++ +VLDEADRM D+GFI DI+ + + +P   
Sbjct: 120 LRRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAK- 178

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
            R N+LFSAT S  ++ LA   ++N   V V P       +++ +       K ALL  L
Sbjct: 179 -RQNLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAEL 237

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
                  + ++F  TKH   ++   + A+  +   + G+  Q  R + L  F +G + +L
Sbjct: 238 TRFYRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRML 297

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           +ATD+AARG+ I ++ +V N++LP   EDYVHRIGRTGRAGASG + S  C E A  L  
Sbjct: 298 IATDIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRD 357

Query: 371 IESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGN----RKPQ- 425
           IE  I+ ++P  ++     +  LP       S  Q ++   GS+     GN    RKPQ 
Sbjct: 358 IERLIKQSLPRKEFVGFEPVHGLP------PSENQGKSKPGGSKQGAKPGNKSQGRKPQG 411

Query: 426 QRRPRAPRPKK 436
           Q R   P+ ++
Sbjct: 412 QSRNAQPKQRQ 422