Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  245 bits (625), Expect = 2e-69
 Identities = 143/366 (39%), Positives = 203/366 (55%), Gaps = 4/366 (1%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           KF  +   P+++  L + G+   TPIQ LA+P +  GQD+   AQTGTGKT AF      
Sbjct: 2   KFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPILQ 61

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            LL TP A  R  T+ RA+I+APTREL  QI N+ +       L     +GG   D Q  
Sbjct: 62  KLLDTPKA--REATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQ 119

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           KL+ G DI++ T GR+++       +L  ++ +VLDEADRM D+GFI DI+ L +     
Sbjct: 120 KLRKGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACN-- 177

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
           K+R  ++FSAT S  V++LA E M     +  +        + + ++      K  LL  
Sbjct: 178 KERQTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELLSE 237

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           LI  +   R ++F+ T+  CE++   L  D     ++  +  Q  R R L+ FT+G + +
Sbjct: 238 LIGRKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRV 297

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LV+T+VAARGL IP + +V N+DLP   EDYVHR+GRTGRAG SG +ISF   E    L 
Sbjct: 298 LVSTEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTLA 357

Query: 370 AIESYI 375
            IE  I
Sbjct: 358 DIEKLI 363