Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 637 a.a., ATP-dependent RNA helicase DeaD (RefSeq) from Shewanella amazonensis SB2B

 Score =  248 bits (633), Expect = 4e-70
 Identities = 146/369 (39%), Positives = 213/369 (57%), Gaps = 16/369 (4%)

Query: 8   EHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTAT 67
           E  F + GL   V+  L++ G+   TPIQA ++  L+SGQDI GQAQTGTGKT AF    
Sbjct: 5   EKTFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALP- 63

Query: 68  FNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAST----GLKAALAYGGES 123
              LL +  A   A   P+ +++APTRELA+Q+   AE   +      G      YGG+S
Sbjct: 64  ---LLCSVDANLNA---PQILVLAPTRELAVQV---AEAFTSYAKHMKGFHVLPIYGGQS 114

Query: 124 YDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLF 183
             +QL  L+ G  +++GT GR++D  ++    L+ ++A+VLDEAD M  +GFI DI ++ 
Sbjct: 115 MYQQLQALRRGPQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWIL 174

Query: 184 RRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHK 243
              PE   R   LFSAT+  +++ +A +H+ NP ++ +     T   I++     S  +K
Sbjct: 175 EHTPE--SRQLALFSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNK 232

Query: 244 MALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFT 303
           +  L  ++E E  +  IIF  T++ C ++   L A  +    L GD+ Q+ RER ++Q  
Sbjct: 233 LEALVRVLEVENTEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLK 292

Query: 304 QGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE 363
            G +DIL+ATDVAARGL + ++ HV NYD+P D E YVHRIGRTGRAG +G +I F    
Sbjct: 293 SGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSR 352

Query: 364 YAINLPAIE 372
               L  IE
Sbjct: 353 EMRMLRTIE 361