Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., ATP-dependent RNA helicase RhlE (RefSeq) from Shewanella amazonensis SB2B

 Score =  249 bits (637), Expect = 1e-70
 Identities = 165/433 (38%), Positives = 232/433 (53%), Gaps = 27/433 (6%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL P +   LE   +   T IQ  A+PV LSG+++   AQTGTGKT AF       
Sbjct: 3   FARLGLAPAITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLIER 62

Query: 71  LLTTPAAEGRAETQPR--AIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQL 128
           L     ++G+ E + R  A+I+APTREL +Q+ ++     A+  L     YGG     Q 
Sbjct: 63  L-----SQGKTERKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQK 117

Query: 129 AKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
             L +GVDIL+ T GR+ D Y QR      IQ +VLDEADRM D+GFI+ I  L  RM  
Sbjct: 118 QALIAGVDILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRM-- 175

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNP-EHVVVEPEQKTGHRIQEELFYPSNEHKMALL 247
           P +R N+LFSATLS R++ELA   + +P E  + +P +K    I + L     + K ALL
Sbjct: 176 PTNRQNLLFSATLSPRIRELAKTAVPDPVEIAIAKPSKK---EISQWLVTVDKDTKSALL 232

Query: 248 QTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDV 307
             LI+ E   +A+IF  TKH   ++ + L               Q  RE++L +F  G +
Sbjct: 233 SHLIQTEQWQQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSL 292

Query: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
             LVAT VAARG+ + ++  V NYDLP   ++Y+HRIGRTGRAG +G ++S   ++   N
Sbjct: 293 QYLVATGVAARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKN 352

Query: 368 LPAIESYIEHAIP---TSDYDPSALLTDLPAPLSL-----RSSPQ-QRRTNTAGSRNSNN 418
           L  IES + H I       ++P       P P+S+     +S P+ Q  +  +  RNS  
Sbjct: 353 LCMIESRLGHVIERRVIEGFEPKK-----PIPVSILDYKPKSQPKAQPSSELSPQRNSQP 407

Query: 419 GGNRKPQQRRPRA 431
              RK +  + RA
Sbjct: 408 SSQRKSRTEKLRA 420