Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 799 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  273 bits (699), Expect = 1e-77
 Identities = 162/434 (37%), Positives = 239/434 (55%), Gaps = 16/434 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FAD GL P+ +  +E+ G+   TPIQ  A+P +  G+D+ G AQTGTGKT +F     + 
Sbjct: 3   FADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMIDI 62

Query: 71  LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           L     A G+A+ + PR++I+APTRELA Q+  +         L  AL  GGES ++Q  
Sbjct: 63  L-----ASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQK 117

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
            L  GVD+LI T GR+ID +++    L  ++ +V+DEADRM D+GFI D+  +   +P  
Sbjct: 118 VLDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLP-- 175

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
           K R  + FSAT+   ++ LA   + NP+ V +EP QK    +++ L       K   L+ 
Sbjct: 176 KIRQTLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQ 235

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           L+  E    A IF N K   + ++  L+     +  L GD+PQ  R   LE+F + +V +
Sbjct: 236 LLRRETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQL 295

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           +V +DVAARG+ + +V+HVFN+D+P   EDY+HRIGRTGRAG  G + + A  E A  L 
Sbjct: 296 MVCSDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLR 355

Query: 370 AIESYIEHAIPTSDYDPSALLTDLPA-PLSLRSSPQQRRTNTAG----SRNSNNGGNRKP 424
           AIE+ +   IP    DP   L+D+    ++L  +   RR    G     R +   G    
Sbjct: 356 AIENLLGKTIPP---DPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSA 412

Query: 425 QQRRPRAPRPKKEA 438
              RPR   P++ A
Sbjct: 413 DAERPRPLAPERAA 426