Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., DEAD/DEAH box helicase from Rhodanobacter denitrificans MT42

 Score =  446 bits (1148), Expect = e-130
 Identities = 226/452 (50%), Positives = 308/452 (68%), Gaps = 23/452 (5%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           M +T +T+  FA+F L P +  GL+  GF  CTPIQ + LP+ L+G+D+AGQAQTGTGKT
Sbjct: 1   MSQTVLTDTFFANFDLHPLLQQGLDDSGFTRCTPIQEMTLPLALAGRDVAGQAQTGTGKT 60

Query: 61  LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
            AFL A  NHLLTTPA   R ++ PRA+++APTRELAIQI  DA+ +   TGL++AL YG
Sbjct: 61  CAFLVALMNHLLTTPAVAERKDSDPRALVIAPTRELAIQIEKDAKAIGRHTGLRSALIYG 120

Query: 121 GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
           G  YDKQ  +L+ G DI+I T GR++D++KQ VF+LN ++ +V+DEADRMFDLGFIKD+R
Sbjct: 121 GVDYDKQRQQLKDGCDIIIATPGRLLDYHKQGVFSLNSVEVMVIDEADRMFDLGFIKDVR 180

Query: 181 FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN 240
           F+FR++P  + R  +LFSATLS+RV ELA+EHM+  E +VVE +  T  ++++ +++P+ 
Sbjct: 181 FIFRKLPPREQRQVLLFSATLSHRVLELAYEHMHEAEKLVVESDHVTADKVRQVVYFPAK 240

Query: 241 EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
           E KM LL  LI+   P R+IIF NTK   E++   +     RVG ++GDVPQ KR+++L+
Sbjct: 241 EEKMPLLLNLIDRHKPSRSIIFVNTKAAAERVTERVKRHGCRVGAISGDVPQLKRQKLLQ 300

Query: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
           +F  G +DILVATDVAARGLHIP V+HVFNYDLP + EDYVHRIGRT R GA G +ISFA
Sbjct: 301 RFQDGQLDILVATDVAARGLHIPAVSHVFNYDLPHEAEDYVHRIGRTARLGAEGDAISFA 360

Query: 361 CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPL-------------------SLRS 401
           C+ YA++LP IE+YI  +IP    +P  L+   P  +                   + R 
Sbjct: 361 CDLYAMSLPDIETYIGQSIPVGAMEPELLVMPKPHAIDPEFAANAAADSAAFGDVVAPRP 420

Query: 402 SPQQRRTNTAG----SRNSNNGGNRKPQQRRP 429
             + RR+   G       S+ G  R P++R+P
Sbjct: 421 GEKPRRSGAPGRSGERSGSSRGAARPPRERKP 452