Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  270 bits (689), Expect = 9e-77
 Identities = 165/437 (37%), Positives = 237/437 (54%), Gaps = 20/437 (4%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           MK   +TE  F+  GL  +++  + + G+   TPIQA A+P  L+GQD+ G AQTGTGKT
Sbjct: 1   MKGRDVTE--FSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKT 58

Query: 61  LAF---LTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAAL 117
            AF   L A        PAA+       R +++APTRELA QI  + + L   T +K  L
Sbjct: 59  AAFGVPLIAQMMQYGRKPAAK-----TVRGLVLAPTRELANQIAANLKGLTEGTPIKTGL 113

Query: 118 AYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIK 177
             GG S + Q+++L  G DILI T GR++D   +   +L     +VLDEAD+M DLGFI 
Sbjct: 114 VVGGVSINPQISRLSRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIH 173

Query: 178 DIRFLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFY 237
            +R +   +PE   R  MLFSAT+  ++ E+A  ++ +P  + V P  K   +I + + +
Sbjct: 174 ALRKIAALLPE--QRQTMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHF 231

Query: 238 PSNEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRER 297
            +   K++LL+ L+     +R ++F  TKH  E++   L+A       + G+  Q +RER
Sbjct: 232 IAKAEKLSLLKELLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRER 291

Query: 298 ILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357
            L  F  G+V ILVATDVAARGL IP V +V+NY+LP+  + YVHRIGRT RAG  G ++
Sbjct: 292 ALASFKSGEVKILVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAV 351

Query: 358 SFACEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLR--------SSPQQRRTN 409
           +F   +    L AI+  +   IP +   P  +L D  AP   R          P   R  
Sbjct: 352 AFCAPDEMGELKAIQKTMNLNIPVASGRPWEVLPDAKAPAGRRGGGKPGGGGKPGGHRRR 411

Query: 410 TAGSRNSNNGGNRKPQQ 426
            +G      GG R   Q
Sbjct: 412 RSGGGGGGQGGARSGGQ 428