Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  246 bits (629), Expect = 9e-70
 Identities = 156/432 (36%), Positives = 232/432 (53%), Gaps = 30/432 (6%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           KF+D  L P+V+  +E+ G+   TPIQA A+P  L G+D+ G AQTGTGKT     A+F 
Sbjct: 3   KFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKT-----ASFT 57

Query: 70  HLLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQL 128
             + T  A GRA  + PR++++ PTRELA Q+  + +       L  AL  GG S+ +Q 
Sbjct: 58  LPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 117

Query: 129 AKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
             +  GVD+LI T GR++D +++    L+ ++ +V+DEADRM D+GFI DI  +F   P 
Sbjct: 118 TLIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPF 177

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEE--LFYPSNE----- 241
            +  L   FSAT++  ++ +    ++ P  V V  +  T   I +   LF  S       
Sbjct: 178 TRQTL--FFSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGS 235

Query: 242 HKMALLQTLIEEEWPD--RAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERIL 299
            K  LL+ LI++E      AIIF N K   + +   L    +    + GD+ Q +R + L
Sbjct: 236 EKRKLLRHLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTL 295

Query: 300 EQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISF 359
           E F +G +  LVA+DVAARGL +P V+HVFN+D+P   EDYVHRIGRTGRAG  G ++  
Sbjct: 296 EGFREGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMI 355

Query: 360 ACEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNG 419
              +   NL  IE  +++ IP  +               L+ +  + +   +    S+  
Sbjct: 356 CVPKDEKNLEDIERLVQNEIPRIEN-------------PLKKAKAEPKAKDSKDDASSET 402

Query: 420 GNRKPQQRRPRA 431
             RK + RRP A
Sbjct: 403 TERKTRSRRPSA 414