Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  266 bits (681), Expect = 7e-76
 Identities = 152/415 (36%), Positives = 228/415 (54%), Gaps = 12/415 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F+   L   +   LE   F   T IQA A+P++LSG D+   AQTGTGKT AF       
Sbjct: 3   FSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPILAK 62

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           L+    AEG ++ QPRA+++ PTRELA+Q+          T L A L YGG S + Q  +
Sbjct: 63  LMGLAQAEG-SDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQQ 121

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L +GVD+++ T GR++D +++    L+ +  +V DEADRM D+GF  +I  L   +P   
Sbjct: 122 LAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPS-- 179

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
           +R  +LFSATL  +V  L+   +  P+ + V P+      +++ ++   +E K ALL  L
Sbjct: 180 ERQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHL 239

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           I +    R ++F+  K   +++ A L           GD+ Q  RE++L  F +G++ +L
Sbjct: 240 INKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVL 299

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VATDVAARG+ I  + +V NY+LP   +DYVHRIGRTGRAG  G +++  CEE A+ L  
Sbjct: 300 VATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEE 359

Query: 371 IESYIEHAIPTS---DYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNR 422
           IE+ ++  +P      ++P     D P P     + Q+RR    G      GG R
Sbjct: 360 IEALLDKRLPQQWLPGFEPDLTKAD-PNPRRNGKAAQKRRAKRRG-----QGGRR 408