Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  248 bits (633), Expect = 3e-70
 Identities = 159/437 (36%), Positives = 240/437 (54%), Gaps = 17/437 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA+ GL   V+  LE+ G+   TPIQ  A+P+ L G+++   AQTG+GKT  F+      
Sbjct: 3   FANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPM--- 59

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           L T    + + + + RAII+APTREL +Q+ +         GL +   YGG     Q  +
Sbjct: 60  LTTLMQGQTQRKKRARAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQ 119

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L  GVDI++ T GR+ D Y QR    + ++ +VLDEADRM D+GFI+DI  +   +PE  
Sbjct: 120 LIEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPE-- 177

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
           +R N+LFSATLS  V+ELA + +    H+ V   Q +   I++ +     + K ALL  L
Sbjct: 178 ERQNLLFSATLSRPVRELAKQAVPKAIHLSVTKNQDSQPDIEQWITTVDKDKKSALLSQL 237

Query: 251 IEEE-WPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           I++  WP +A+IF  TKH   ++ + L     +   +     Q  RE+IL  F  G +  
Sbjct: 238 IKDNAWP-QALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAY 296

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           L++T ++ARG+ I  +  V NYDLP   ++YVHRIGRTGRAGA G +IS   ++   NL 
Sbjct: 297 LISTGISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLC 356

Query: 370 AIESYIEHAIPTSDYDPSALLTDLPAPLS-LRSSPQQRRTNTAGSRNSN---NGGNRKPQ 425
            IES ++H +   + +  A     P P+S L   P+ +R    G + S    + G + P+
Sbjct: 357 MIESRLDHLLERREIEGFA--PRKPVPISILNYVPKAKREQAQGEKGSEAAASQGVKAPK 414

Query: 426 Q----RRPRAPRPKKEA 438
           +    RR   PR + ++
Sbjct: 415 EAKDKRREDKPRGQSKS 431