Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  273 bits (698), Expect = 9e-78
 Identities = 161/432 (37%), Positives = 239/432 (55%), Gaps = 14/432 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F   GL   ++  +  KG+   +PIQA A+P +LSG+D+   AQTGTGKT  F       
Sbjct: 3   FTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLEL 62

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           L   P A  +   Q RA+++ PTRELA QI            L++A+ +GG     Q+++
Sbjct: 63  LSQGPRARSK---QVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQ 119

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L+ GVDIL+ T GR++D Y+Q   + + ++ +VLDEADRM D+GFI DI+ +   +P PK
Sbjct: 120 LKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILP-PK 178

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
            R N++FSAT S  ++ LA   +NNP  + V P   T + +Q+ +       K A L  L
Sbjct: 179 -RQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKL 237

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           I++    + ++F+ TKH   ++  HL A       + G+  Q  R + L  F  GDV +L
Sbjct: 238 IQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVL 297

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VATD+AARGL I Q+  V N+DLP+  EDYVHRIGRTGRAGA G ++S   +E A  L  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLAD 357

Query: 371 IESYIEHAIPTSD---YDPSALLTD---LPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKP 424
           IE  I   +P ++   ++P+  L +    P        P+  +  +   R+SN   N   
Sbjct: 358 IERLIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSN--- 414

Query: 425 QQRRPRAPRPKK 436
            QR  +A +P++
Sbjct: 415 GQRSDKAGQPRR 426