Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., ATP-dependent RNA helicase RhlB (RefSeq) from Shewanella loihica PV-4

 Score =  592 bits (1527), Expect = e-174
 Identities = 296/436 (67%), Positives = 343/436 (78%), Gaps = 9/436 (2%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           M +TH+T  KFADF L P++   L + GF YCTPIQAL+LP+LL  +DIAGQAQTGTGKT
Sbjct: 1   MSETHLTNQKFADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKT 60

Query: 61  LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
           LAFL ATFNHLLTTP  +GR   QPRAI+MAPTRELAIQI  D E L   TGLK  + YG
Sbjct: 61  LAFLVATFNHLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYG 120

Query: 121 GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
           GESY+ Q   L  GVDILIGTTGRIID+ +Q V NL+ IQAVVLDEADRMFDLGFIKDIR
Sbjct: 121 GESYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIR 180

Query: 181 FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN 240
           FLFRRMP+  +RLNMLFSATLS +VQELA++HMN+PE V + P +KT   I EE+FYPS 
Sbjct: 181 FLFRRMPDANERLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSM 240

Query: 241 EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
           E KM LL TLIEE+WP++AI+F+NTKH CE +WAHL  D HRVGLLTGDVPQKKR RILE
Sbjct: 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILE 300

Query: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
           QFT+G++DILVATDVAARGLHI  V+HV+NYDLPDDCEDYVHRIGRTGRAG  G S+SFA
Sbjct: 301 QFTKGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA 360

Query: 361 CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG 420
           CEEYA+NLPAIE YI+H+IP ++YD  ALL D+P P+ +      R T  +G      GG
Sbjct: 361 CEEYALNLPAIEHYIQHSIPVTNYDSEALLDDIPPPVRIHRKHSPRPTGRSG------GG 414

Query: 421 NRKPQQRRPRAPRPKK 436
             KPQ  RP A RP++
Sbjct: 415 --KPQGGRPGA-RPRR 427