Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  278 bits (712), Expect = 2e-79
 Identities = 163/428 (38%), Positives = 237/428 (55%), Gaps = 18/428 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F D GL+ +++  + ++G+   TPIQ  A+P +L+G+D+   AQTGTGKT  F       
Sbjct: 3   FTDLGLKAEILRAIAEQGYTEPTPIQQQAIPAVLAGRDLMACAQTGTGKTAGFTLPILQL 62

Query: 71  LLTTPAAEG---RAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQ 127
           L    A E    R   +PR +I+APTRELA+Q+            LK+   +GG   + Q
Sbjct: 63  LSQAQAGESPLNRLARKPRVLILAPTRELALQVEESVRTYGQHLPLKSMSMFGGVGMNPQ 122

Query: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
           +A L+ GVDIL+   GR++D   QR  +L+ I+ +VLDEADRM D+GFI+DIR +   +P
Sbjct: 123 IAALKRGVDILVACPGRLLDHINQRTLDLSGIEILVLDEADRMLDMGFIRDIRKILALLP 182

Query: 188 EPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALL 247
               R N+LFSAT S  ++ELA   +++P+ + V     T   + +++ +   E K  +L
Sbjct: 183 PNGKRQNLLFSATFSDEIKELARSFLHDPQSIEVARRNTTVETVSQKVIHVDREKKKDVL 242

Query: 248 QTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDV 307
             L E    ++ +IF  TKH  + +   L  +  R   L G+  Q  R R L +F +G +
Sbjct: 243 LHLFENRGWNQVLIFTRTKHGADALSRRLDKEGIRSAALHGNKTQGARVRALTEFKEGKL 302

Query: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
             LVATD+AARG+ I Q+ +V NY+LP+  EDYVHRIGRTGRAGA G +IS  C +   N
Sbjct: 303 VALVATDIAARGIDIDQLPYVVNYELPNVAEDYVHRIGRTGRAGAEGEAISLVCHDERDN 362

Query: 368 LPAIESYIEHAIPTS---DYDPSALLTDLPAPLSLRSSPQQRRTNTAGSR---------- 414
           L +IE  I+  +       ++PSA  T  PAP   R   +Q +    G R          
Sbjct: 363 LRSIERLIKKDLEKEVLPGFEPSANPT--PAPPQNRGGQRQGQGQRQGQRQGQGQPGRSF 420

Query: 415 NSNNGGNR 422
            +N GGNR
Sbjct: 421 GNNGGGNR 428