Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  254 bits (649), Expect = 6e-72
 Identities = 142/364 (39%), Positives = 212/364 (58%), Gaps = 11/364 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  L   G+   + IQA  +P+L+ G+D+ G AQTGTGKT AF       
Sbjct: 8   FAQLGLSEPILQALTDVGYETPSSIQAECIPLLMEGKDLLGMAQTGTGKTAAFALPLLQK 67

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAST-GLKAALAYGGESYDKQLA 129
           L  T       +  P+A+++APTRELAIQ+    +       G      YGG+S   QL 
Sbjct: 68  LDVT-------QRFPQALVLAPTRELAIQVAEACQKYAKHLPGFHVLPIYGGQSLGIQLK 120

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           +LQ G  ++IGT GR++D  +++  +L+ ++ +VLDEAD M  +GFI D+ ++   +P  
Sbjct: 121 QLQRGAHVIIGTPGRVMDHLERKSLDLSRLKTLVLDEADEMLRMGFIDDVEWILEHIPA- 179

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
            +R   LFSAT+  +++ +A +++ +P+ V ++    T   IQ+  +  S  HK+  L  
Sbjct: 180 -ERQTALFSATMPEQIRRVAQKYLRDPQEVKIKSATSTVSAIQQRYWQVSGLHKLDALTR 238

Query: 250 LIE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308
           ++E E+  D AIIF  TK   E++   L A  +    L GD+ Q  RER++EQ   G +D
Sbjct: 239 IMEVEDSLDAAIIFVRTKTATEELAQKLEARGYAAAALNGDMNQASRERVIEQLKSGGLD 298

Query: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368
           I++ATDVAARG+ +P+V+HV NYD+P D E YVHRIGRTGRAG +G +I F        L
Sbjct: 299 IVIATDVAARGIDVPRVSHVINYDIPYDVEAYVHRIGRTGRAGRTGTAILFVSPREMRML 358

Query: 369 PAIE 372
             IE
Sbjct: 359 RTIE 362