Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis JJ

 Score =  250 bits (638), Expect = 9e-71
 Identities = 141/350 (40%), Positives = 210/350 (60%), Gaps = 10/350 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQ-DIAGQAQTGTGKTLAFLTATFN 69
           F + GL  ++++ LEKKGF   TPIQ  A+P+L+ G+ DI GQAQTGTGKT AF      
Sbjct: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP--- 60

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            +L T     R     +A+I+APTRELAIQ+  + + +  S  L     YGG+S D+Q+ 
Sbjct: 61  -ILETIDEHSR---NTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIR 116

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           +L+ GV I++GT GRI+D   +R   L ++  VVLDEAD M ++GFI D+  + + +   
Sbjct: 117 ELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVST- 175

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
            D+  +LFSATL   + +LA  +M   + + V+ +Q T     +  +   +  K  LL  
Sbjct: 176 -DKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSR 234

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           +I+ E     +IF  TK   +++   L    +    L GD+ Q +RE+ L++F    +++
Sbjct: 235 IIDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINV 294

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISF 359
           LVATDVAARG+ I  +THV N+D+P + E YVHRIGRTGRAG  G++I+F
Sbjct: 295 LVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITF 344