Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., DEAD/DEAH box helicase domain protein from Marinobacter adhaerens HP15

 Score =  339 bits (870), Expect = 9e-98
 Identities = 186/426 (43%), Positives = 263/426 (61%), Gaps = 8/426 (1%)

Query: 5   HITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFL 64
           H  + +F+D  L  +++D +   GF YCTPIQA  LP  L+ +D+ GQAQTGTGKT AFL
Sbjct: 7   HTGDLRFSDLNLDKRLLDAITAIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFL 66

Query: 65  TATFNHLLTTPAAEG-RAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGES 123
                 LL TP  E  R  ++PR + +APTRELA+QI  DAE L   TG       GG +
Sbjct: 67  ITAIQSLLETPIPEKERFASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVGGMN 126

Query: 124 YDKQLAKLQSG-VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFL 182
           YDKQ  +LQ+  VDIL+ T GR+IDF   +   L+ +  ++LDEADRM D+GFI D++ +
Sbjct: 127 YDKQRDQLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRI 186

Query: 183 FRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEH 242
            R+    ++R  +LFSAT +  V  LA    +N E V +EPEQKT  R+++ ++   ++ 
Sbjct: 187 IRKCTPKEERQTLLFSATFNQDVLNLASMWTSNAEFVEIEPEQKTAERVEQTVYLVGDDE 246

Query: 243 KMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQF 302
           K+ +L   ++    ++A++FAN + +C  +   L     +V L++G++ Q KR + L+QF
Sbjct: 247 KLPVLVNFLKRPEVEKALVFANRRDQCRDLEEDLRNQGVKVALMSGEIAQNKRLKTLDQF 306

Query: 303 TQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACE 362
            +G + +LVATDVA RG+H+  VTHVFNY+LPD+ EDYVHRIGRTGRAG  G SISFA E
Sbjct: 307 KKGSIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGE 366

Query: 363 EYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNR 422
           + +  LPAIE+YI   + T+  D  AL+  +  P   R   + RR    G R     G R
Sbjct: 367 DDSFALPAIETYISQKLKTAVPD-EALMAPMDNPPITRK--RGRRPQGGGGRGQ---GGR 420

Query: 423 KPQQRR 428
             +QRR
Sbjct: 421 NQRQRR 426