Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., ATP-dependent RNA helicase DeaD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  244 bits (624), Expect = 4e-69
 Identities = 139/368 (37%), Positives = 213/368 (57%), Gaps = 15/368 (4%)

Query: 8   EHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTAT 67
           E  F + GL   ++  L++ G+   TPIQ+ ++  L++G+DI GQAQTGTGKT AF    
Sbjct: 5   ERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPL 64

Query: 68  FNHLLTTPAAEGRAETQPRAIIMAPTRELAIQI---FNDAEPLLASTGLKAALAYGGESY 124
            N + +        +T P+ +++APTRELA+Q+   F+     + +        YGG+S 
Sbjct: 65  LNKVTS--------QTTPQILVLAPTRELAVQVAEAFSSYAKFMKN--FHVLPIYGGQSM 114

Query: 125 DKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFR 184
            +QL  L+ G  +++GT GR++D  ++    L  +QA+VLDEAD M  +GFI DI ++  
Sbjct: 115 QQQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILE 174

Query: 185 RMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKM 244
             P P+ +L  LFSAT+  +++ +A +H+ N  ++ +     T   I++     S  +K+
Sbjct: 175 HTP-PQRQL-ALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKL 232

Query: 245 ALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQ 304
             L  ++E E  +  IIF  T++ C ++   L A  +    L GD+ Q+ RER +EQ   
Sbjct: 233 EALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKN 292

Query: 305 GDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEY 364
           G +DIL+ATDVAARGL + ++ HV NYD+P D E YVHRIGRTGRAG +G +I F     
Sbjct: 293 GKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSRE 352

Query: 365 AINLPAIE 372
              L  IE
Sbjct: 353 MRMLRTIE 360