Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  256 bits (654), Expect = 1e-72
 Identities = 164/462 (35%), Positives = 244/462 (52%), Gaps = 43/462 (9%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F+  GL   +   + ++G+   +PIQA A+P +L+G+D+   AQTGTGKT  F       
Sbjct: 3   FSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLP---- 58

Query: 71  LLTTPAAEGRAET-QPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           LL   A   +A++ Q RA+++ PTRELA Q+    E       L++A+ +GG   + Q+ 
Sbjct: 59  LLELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQIN 118

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           KL+ GVD+L+ T GR++D  +Q     N ++ +VLDEADRM D+GFI+DI+ +   +P  
Sbjct: 119 KLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAK 178

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
             R N++FSAT S  ++ELA   +N+P  + V P       +++ +       K ALL  
Sbjct: 179 --RQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQ 236

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           LI++E   + ++F+ TKH   ++   L         + G+  Q  R + L  F  G+V +
Sbjct: 237 LIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRV 296

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LVATD+AARGL I Q+  V N+DLP+  EDYVHRIGRTGRAGA+G ++S    E    L 
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLK 356

Query: 370 AIESYIE--------------HAIPTSDYDPSALLTDL--------------PAPLSLRS 401
            IE  I               HA+P +  +P    T +              PAP S   
Sbjct: 357 DIERLINRVLERQEVEGFSPVHALPETTLNPQGKDTKVKAVANHRKHRSAGKPAPRSGSG 416

Query: 402 SPQQ------RRTNTAGSRNSNNGGNRKPQQRRPRAPRPKKE 437
              Q      +R N+A SRNSN   N   +    R+P+PK +
Sbjct: 417 RDTQGNRENSQRQNSASSRNSNEHNN--TEAAVARSPKPKSK 456