Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  576 bits (1484), Expect = e-169
 Identities = 290/439 (66%), Positives = 337/439 (76%), Gaps = 8/439 (1%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           M +TH++  KFAD  L P+V   L + GF +CTPIQAL+LPVLL  +DIAGQAQTGTGKT
Sbjct: 1   MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT 60

Query: 61  LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
           +AFL ATFNHLL++   EGR   QPRAIIMAPTRELAIQI  DA  L   T LK  + YG
Sbjct: 61  MAFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYG 120

Query: 121 GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
           GESYD Q   L  GVDILIGTTGRIID+ +Q + NLN IQAVVLDEADRMFDLGFIKDIR
Sbjct: 121 GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIR 180

Query: 181 FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN 240
           FLFRRMP    RLNMLFSATLS +VQELA++HMN+P  V + PE+KT   I+EE+FYPS 
Sbjct: 181 FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ 240

Query: 241 EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
           E KM LL TLIEE+WP++AI+F+NTKH CE +W+ L  D HRVGLLTGDVPQKKR RILE
Sbjct: 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE 300

Query: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
           QFTQG +DILVATDVAARGLHI  V+HV+NYDLPDDCEDYVHRIGRTGRAG  G S+SFA
Sbjct: 301 QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA 360

Query: 361 CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRN--SNN 418
           CEEYA+NLPAIE+YI H+IP S+YD  ALL D+P+P+ +       R + AG+RN    +
Sbjct: 361 CEEYALNLPAIETYINHSIPVSNYDRDALLDDIPSPVKI------HRKHPAGARNLRERS 414

Query: 419 GGNRKPQQRRPRAPRPKKE 437
           G  R P   R     P+ +
Sbjct: 415 GAGRTPGAHRSGGRPPRHD 433