Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., ATP-dependent RNA helicase from Caulobacter crescentus NA1000

 Score =  251 bits (640), Expect = 5e-71
 Identities = 159/425 (37%), Positives = 223/425 (52%), Gaps = 18/425 (4%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           +F D GL P  +  +   G+   TPIQA A+PV L+GQD+ G AQTGTGKT AF     +
Sbjct: 3   EFTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62

Query: 70  HLLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQL 128
            L +     GRA+ + PRA+++APTRELA Q+    E     T L  AL  GG S+  Q 
Sbjct: 63  RLQS-----GRAKARMPRALVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQE 117

Query: 129 AKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
            KL  GVD+LI T GR++D +++    +  +Q +V+DEADRM D+GFI DI  +F+  P 
Sbjct: 118 KKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPP 177

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF-YPSNEHKMA-- 245
            K  L   FSAT+   +  L  + + +P  + V     T   I + L   PS++ K    
Sbjct: 178 KKQTL--FFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRL 235

Query: 246 LLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQG 305
            L+ LIE+   +  I+F N K   + +   L    +    + GD+ Q +R + L  F  G
Sbjct: 236 ALRALIEKAGIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSG 295

Query: 306 DVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYA 365
            + ILVA+DVAARGL IP V+HVFNYD+P   +DYVHRIGRTGRAG +G +       Y 
Sbjct: 296 ALKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGIT-------YM 348

Query: 366 INLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQ 425
           +  PA +   +  I      P     DL    ++    +  R      R+    G R  +
Sbjct: 349 LVTPADDKGFDKVIKLIGSTPDEEKLDLDYSNAVTVKREGDRKRGGRDRDRGERGERSER 408

Query: 426 QRRPR 430
             R R
Sbjct: 409 PARGR 413