Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., DEAD/DEAH box helicase from Burkholderia phytofirmans PsJN

 Score =  264 bits (675), Expect = 4e-75
 Identities = 153/427 (35%), Positives = 234/427 (54%), Gaps = 16/427 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F  FGL P ++  +++ G+   TPIQ  A+PV+L+G+D+ G AQTGTGKT +F       
Sbjct: 13  FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72

Query: 71  LLTTPAAEGRAETQP-RAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           LL   +        P RA+I+ PTRELA Q+  + +     T L++A+ +GG   + Q  
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           +L+ GV+ILI T GR++D  +Q+  NL  +Q +VLDEADRM D+GF+ D++ +   +P  
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLP-- 190

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
           K+R  +LFSAT S  +++LA  ++ NP+ + V     T   + + ++  +   K   +  
Sbjct: 191 KERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQ 250

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           LI E    + I+F N+K    ++   L  D      + GD  Q +R + L+ F +G+++ 
Sbjct: 251 LIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEA 310

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LVATDVAARGL I ++  V N+DLP + EDYVHRIGRTGRAGASG ++S         L 
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 370

Query: 370 AIESYIEHAIPTSDYDPSALLTDLP--------APLSLRSSPQQRRTNTAGSRNSNNGGN 421
            IE  I+  +     D   L  + P        AP   RSS  +    +     +++G  
Sbjct: 371 DIEKLIKRPL-----DVQRLTVEAPVRHHHEERAPRRERSSEGREDRGSRRRTGASSGSY 425

Query: 422 RKPQQRR 428
            +P   R
Sbjct: 426 DRPHHHR 432