Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  248 bits (634), Expect = 2e-70
 Identities = 155/443 (34%), Positives = 226/443 (51%), Gaps = 21/443 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F+  GL   ++  + + G+   TPIQ  A+P +L+G+++   AQTGTGKT +F+    + 
Sbjct: 3   FSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
               P    +   + RAII+ PTRELA+Q+  +         L A   YGG     Q  +
Sbjct: 63  FADAPKIRPK---RVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKR 119

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L  GVD+L+ T GR++D Y QR    + +  +VLDEADRM D+GFI+DI  +  ++PE  
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPE-- 177

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
            R N+LFSATLS +V+ LA   + +   + +  +      I + L     + K ALL  L
Sbjct: 178 QRQNLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDKDKKSALLSHL 237

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           I+E+   +A+IF  TKH   ++ + L               Q  RE++L  F  G V  L
Sbjct: 238 IQEQNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VAT VA+RG+ I  +  V NYDLPD+ +DY+HRIGRTGRAG  G +ISF  ++   NL A
Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357

Query: 371 IESYIEHAI--------------PTS--DYDPSALLTDLPAPLSLRSSPQQRRTNTAGSR 414
           IE  + H I              P S  D+ P +       P S   +  Q R  ++G  
Sbjct: 358 IERRLGHVIVRREIAGFEPKKVVPISILDFVPKSASKTERKPNSPAETNLQSRPYSSGKP 417

Query: 415 NSNNGGNRKPQQRRPRAPRPKKE 437
            +      K  +    AP PK +
Sbjct: 418 GTFEATQAKKHRSAKAAPAPKAQ 440