Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  251 bits (642), Expect = 3e-71
 Identities = 149/429 (34%), Positives = 226/429 (52%), Gaps = 9/429 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F+  GL   +   + ++G+   +PIQA A+P +L+G+D+   AQTGTGKT  F       
Sbjct: 3   FSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           L     A+     Q RA+++ PTRELA Q+    E       L++A+ +GG   + Q+ K
Sbjct: 63  LSKGNKAKAG---QIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQK 119

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L+ GVD+L+ T GR++D  +Q+    N ++ +VLDEADRM D+GFI+DI+ +   +P   
Sbjct: 120 LRHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAK- 178

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
            R N++FSAT S  ++ELA   +N P  + V P     + +++ +       K ALL  L
Sbjct: 179 -RQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQL 237

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           I++E   + ++F+ TKH   ++   L         + G+  Q  R + L  F  G+V +L
Sbjct: 238 IKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VATD+AARGL I Q+  V N+DLP+  EDYVHRIGRTGRAGA G ++S    E    L  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRD 357

Query: 371 IESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQRRPR 430
           IE  I   +   + +  + +  LP         + +    A  R   + G   P+    R
Sbjct: 358 IERLINRVLERQEVEGFSPVHTLPESTLNAHGKENKIKAVASQRKHRSAGKPAPRAGSGR 417

Query: 431 ----APRPK 435
                P PK
Sbjct: 418 DGRKTPAPK 426