Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., ATP-dependent RNA helicase RhlB (RefSeq) from Shewanella sp. ANA-3

 Score =  573 bits (1477), Expect = e-168
 Identities = 289/437 (66%), Positives = 333/437 (76%), Gaps = 7/437 (1%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           M +TH++  KFAD  L P+V   L + GF +CTPIQAL+LPVLL  +DIAGQAQTGTGKT
Sbjct: 1   MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT 60

Query: 61  LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
           +AFL ATFNHLL+TP  E R   QPRAIIMAPTRELAIQI  DA  L   + LK  + YG
Sbjct: 61  MAFLVATFNHLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYG 120

Query: 121 GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
           GESYD Q   L  GVDILIGTTGRIID+ +Q + NL  IQAVVLDEADRMFDLGFIKDIR
Sbjct: 121 GESYDVQRKTLDQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIR 180

Query: 181 FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN 240
           FLFRRMP    RLNMLFSATLS +VQELA++HMN P  V + PE+KT   I+EE+FYPS 
Sbjct: 181 FLFRRMPSADQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ 240

Query: 241 EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
           E KM LL TLIEE+WP++AI+F+NTKH CE +W+ L  D HRVGLLTGDVPQKKR RILE
Sbjct: 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE 300

Query: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
           QFTQG +DILVATDVAARGLHI  V+HV+NYDLPDDCEDYVHRIGRTGRAG  G S+SFA
Sbjct: 301 QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA 360

Query: 361 CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRN-SNNG 419
           CEEYA+NLPAIE+YI H+IP S+YD  ALL D+P P+ +       R + AG+RN     
Sbjct: 361 CEEYALNLPAIETYINHSIPVSNYDRDALLEDIPPPVKI------HRRHPAGARNLRERS 414

Query: 420 GNRKPQQRRPRAPRPKK 436
           G  +PQ       RP +
Sbjct: 415 GAGRPQGAHRSGGRPPR 431