Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 866 a.a., Sensory box histidine kinase/response regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  286 bits (732), Expect = 5e-81
 Identities = 165/432 (38%), Positives = 255/432 (59%), Gaps = 19/432 (4%)

Query: 732  GFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQLVT-------------- 777
            G  +   DIT  R   ++L  A + LE+RV +RT EL  LN QL+               
Sbjct: 431  GIFVLIRDITERRRTAEALHQAYQNLEQRVQERTAELTTLNDQLLREIDERSRVELRLRE 490

Query: 778  ATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESALGAA 837
            A + +E+ + SK++FLAAVSHDL+QPLNAARLF S+L E  +     +L  ++ ++L   
Sbjct: 491  AKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALLERREPVANAQLVRNVSNSLQDV 550

Query: 838  EDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPSLLWVHS 897
            E+L+  L+DIS+L++G I      F + ++L NL AE++ +A  +G++   V   + V S
Sbjct: 551  ENLLGTLVDISKLDAGVIKADVAPFGLSELLDNLAAEYAQIARSEGLELHFVGCSVLVRS 610

Query: 898  DPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDKQQEIFEEF 957
            D +LL R+++N L+NA RY P+G+V+LG RR    +V I VWD+GIGI +++ +EIF+EF
Sbjct: 611  DMQLLARILRNLLSNAIRYTPSGRVVLGCRR-HRQRVSIQVWDSGIGIAENRLEEIFQEF 669

Query: 958  NRGGQVR--SDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQPMPSSLTQ 1015
             RG   R   D+GLGLGLAI + IA +LGH I +RSWPG+GS+FSI +  +   P  L  
Sbjct: 670  KRGDVQRPNQDRGLGLGLAIVEKIAGILGHRIQVRSWPGKGSMFSIDVPLSATAPKPL-P 728

Query: 1016 TVAMVNEKGSELQHLRVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKALEGQWI- 1074
             + M       L+  RV  +DN+  I  GMR LLE WGC+V TA       + ++     
Sbjct: 729  CLDMSEPMLERLRGARVWVLDNDAAICAGMRTLLEGWGCQVVTALSEQDLARQVDNYHAE 788

Query: 1075 PDVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGFRFMAKPI 1134
             D++++DY LDN + G++ + +   R       ++I+A+ + ++   I   G   M KP+
Sbjct: 789  ADLLIADYHLDNDQNGVDAVARINARRASPIPAMMITANYSNELKQQIRERGHTLMHKPV 848

Query: 1135 KPLKLRALLNSL 1146
            +P+KL+  ++ L
Sbjct: 849  RPMKLKIAMSHL 860



 Score = 68.6 bits (166), Expect = 2e-15
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 12/113 (10%)

Query: 629 LLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCG 688
           LLQ A++++ QG+A+++ Q  L  WN+R+LEL    P  +   RP  +VI  +  Q L  
Sbjct: 215 LLQRAVDNLSQGVAMINAQGVLELWNRRFLELSGLAP--VAAHRPFNEVIADSELQ-LLT 271

Query: 689 PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFVMSFTDIT 741
           P   + + R           H S +  +DGRV+E++ +P+P GG+V +FTDIT
Sbjct: 272 PASRDSNGR---------LIHESEQRLSDGRVLEIRTHPLPTGGYVNTFTDIT 315



 Score = 45.8 bits (107), Expect = 1e-08
 Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 28/231 (12%)

Query: 599 TSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYL 658
           T AL     +L+    ++ EA    + +   L  AIE I     + D+Q R+V +N R+ 
Sbjct: 65  TDALNQAMAELKAGNHLLGEARLRAETAHRHLIDAIESISDAFVLFDEQQRIVLFNSRFK 124

Query: 659 ELFEFPPGLIQVGRPIADVIRHNAQQGLCGP---GDPEDHVRRRVYHLEQGTSHTSSRVR 715
             +      I  G  +++V R     GL      G  ++HV   +Y L+           
Sbjct: 125 AFWANSRVRIIAGMRLSEVKRLMTANGLFSEEPRGQADEHV---LYRLQ----------- 170

Query: 716 ADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQL 775
            +GR ++V   P   GG V+ FTDIT  + +E   +      +  +LQR ++       +
Sbjct: 171 -NGRWLQVSERPTQEGGRVILFTDITDVKLSETVRREQAIAQKSHLLQRAVDNLSQGVAM 229

Query: 776 VTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKL 826
           + A    E  ++   RFL       + P+ A R F    +EV  ++E+Q L
Sbjct: 230 INAQGVLELWNR---RFLELSG---LAPVAAHRPF----NEVIADSELQLL 270