Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 984 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  317 bits (811), Expect = 4e-90
 Identities = 295/1038 (28%), Positives = 469/1038 (45%), Gaps = 110/1038 (10%)

Query: 6    VIPVSLAYLGVLFLIAWYGDRQT--RWLANWRPWIYSLSIAVYCTSWTFYGTVGQASVNP 63
            +I +S AYL +LF +AW  +R    RW+    P  Y+LS+ VY ++W FYGTVG A    
Sbjct: 10   LILISAAYLFMLFGVAWVSERGLIPRWIIR-HPLTYTLSLGVYASAWAFYGTVGLAYQYG 68

Query: 64   WSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTVIAVL 123
            + FL  Y+     F+    +L  ++ I +   ++SLAD +A R+ +S       T++ ++
Sbjct: 69   YGFLATYLGVCGAFLLAPVLLYPILRITRTYQLSSLADLVAFRF-RSTWSGALTTIVMLI 127

Query: 124  GILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHIDNTEH 183
            G+LP +ALQ++ +   + I     +T+   QE  V+    L + LFT+LFG RHI   E 
Sbjct: 128  GMLPLLALQIQAVADAIGI-----LTLEPLQE-RVALGYCLMIMLFTILFGARHIATREK 181

Query: 184  HRGMMMAIAFESIVKLVAFLCVGVFIAYLA---------WRTDGLELSTIAASTYQAPNW 234
            H G++ AIAFESIVKLV F  +G++  Y+          W            +  Q   W
Sbjct: 182  HEGLVFAIAFESIVKLVTFGAIGLYALYVVFGGPHQLEIWLLQNQSALQALHTPLQEGPW 241

Query: 235  PTLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTGQ 294
             TLL   L+   + + +P  +H    EN  P+ L +A W  P+YLLLMSL V  I W G 
Sbjct: 242  RTLL---LVFFASAIVMPHMYHMTFTENLNPRGLVSASWGLPLYLLLMSLAVPLILWAGL 298

Query: 295  GLLPNTSPDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMPLL 354
             L  +T+P+ F + L + A +  +ALLAF+GG SA+SG++IVST+AL+ M  N LV+PL 
Sbjct: 299  KLGVSTNPEYFTLGLGLAAQSETLALLAFVGGLSASSGLIIVSTLALSGMALNHLVLPL- 357

Query: 355  LRRMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAITQF 414
                     +  +    L   RR+LI  ++   +GFYL+L +   LS +G ++F A  QF
Sbjct: 358  -----YQPSSEGNIYRWLKWTRRSLIFAIIMAGYGFYLLLGAEQDLSNLGIVAFVATLQF 412

Query: 415  APAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNVLLWVITPPDWLV 474
             P +   +YW   NR+G   GL  G  +W++T++     L G+     +      P + V
Sbjct: 413  LPGVLSVLYWPTANRRGYIAGLLGGIGVWVVTMLLP---LVGNLDGFYI------PLFNV 463

Query: 475  ALGLKSADWGM--LLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTPLPENENMSLYQS 532
               L    W +  + S+ +N L +   S+ +  S  E+  A A         EN+   Q 
Sbjct: 464  VYVLDDTSWHLAAIASLAVNVLAFSLFSIFSETSPEEQSAAEACA------VENVRRPQR 517

Query: 533  R-VTVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLP-NQQASSALIRHTERV---LAG 587
            R +     +  A++       + A  +     R+  LP ++    AL R  +R+   L+G
Sbjct: 518  RELMAASPQEFATQLAKPLGAKTAQREVEQALRDLQLPFDEHRPYALRRLRDRIEANLSG 577

Query: 588  VFGASSAKLVLTSAL---QGRKMQLEEVATIVDEASELY-----------DFSRGLLQGA 633
            + G S A+ ++ + L    G +  + E    ++   E Y           D  R   +  
Sbjct: 578  LMGPSVAQDIVENFLPYKNGAEGYITEDIHFIESRLEEYHSRLTGLAAELDALRRYHRQT 637

Query: 634  IEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPE 693
            ++ +  G+  + K   ++ WN+   EL E  P L  VG  ++ +      + L       
Sbjct: 638  LQELPMGVCSLAKDQEILMWNRALEELTEI-PALQVVGSRLSTIA--EPWRSLL-----S 689

Query: 694  DHVRRRVYHL-EQGTSHTSSRVRADGRVIEVQGNPMPG-GGFVMSFTDITVFREAEQSLK 751
            D + +   HL +Q  +H   R   +     +     PG  G V+   D+T   E +Q   
Sbjct: 690  DFIEQADEHLHKQRLAHNGHRRCLNLHKAAIAEPLAPGNSGLVLLVEDLT---ETQQ--- 743

Query: 752  MANETLEERVLQRTLELEKLNKQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFA 811
                 LE+R++                   SER + S  R  A V+H++  P+      A
Sbjct: 744  -----LEDRLV------------------HSERLA-SIGRLAAGVAHEIGNPITGIACLA 779

Query: 812  SSL-SEVAKEAEVQKLAHHIESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSN 870
             +L  E   + E+ +++  I         ++  L+  +     +  L+P S A   V  +
Sbjct: 780  QNLRDEREDDGEIVEISAQIIEQTKRVSRIVQSLMSFAHAGERQHQLYPVSLA--QVTQD 837

Query: 871  LNAEFSALAAKQGVQF-SLVPSLLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRV 929
                 S    +  VQF +L         DP+ L +V+ N L+NA   +P G VI     V
Sbjct: 838  AIGLLSLNRNRTEVQFINLCHPDHVAEGDPQRLAQVLINLLSNARDASPQGGVIRISSEV 897

Query: 930  ATGQVRIDVWDNGIGIEQDKQQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISM 989
            A   V + V D G GI +D Q  +FE F          GLGL L  S    H     I  
Sbjct: 898  AEQTVYLVVEDEGSGIPKDIQDRLFEPFFTTKDPGEGTGLGLALVYSIIEEHYGQIDIDS 957

Query: 990  RSWP--GQGSVFSITLDR 1005
             + P   +G+ F ITL R
Sbjct: 958  PADPETQRGTRFRITLPR 975