Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 869 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  278 bits (712), Expect = 1e-78
 Identities = 174/439 (39%), Positives = 254/439 (57%), Gaps = 25/439 (5%)

Query: 724  QGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQLVT------ 777
            Q N    G FV+   DIT  R   ++L  A + LE+RV +RT EL  LN QL+       
Sbjct: 427  QANGEVAGIFVL-IQDITDRRRTAEALHQAYQNLEQRVRERTAELTSLNGQLLREIDERS 485

Query: 778  --------ATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHH 829
                    A + +E  + SK++FLAAVSHDL+QPLNAARLF S+L E    A    L  +
Sbjct: 486  HAEARLREAKREAEVANLSKTKFLAAVSHDLLQPLNAARLFTSALLE-QPGALNGGLIRN 544

Query: 830  IESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLV 889
            I ++L   E+L+  L+DIS+L++G I      FA+ ++L NL  EF  +A  + +Q   +
Sbjct: 545  ISNSLEDVENLLGTLVDISKLDAGVIKPDIAPFAVSELLENLAMEFRQIAGAEQLQLDFI 604

Query: 890  PSLLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949
            P    V SD +LL R+++N LTNA RY P G+V+LG RR     + I+VWD G+GI  DK
Sbjct: 605  PCSALVRSDIQLLARILRNLLTNAIRYTPKGRVLLGCRR-HRQSLSIEVWDTGVGIASDK 663

Query: 950  QQEIFEEFNRGGQVR--SDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQ 1007
             +EIF+EF RG  VR   D+GLGLGLAI + IA +LGH I + S PG+GS F+I +  A+
Sbjct: 664  LEEIFQEFKRGEGVRPNQDRGLGLGLAIVEKIARILGHRIRVTSQPGRGSCFAIEVPLAK 723

Query: 1008 PMPSSLTQ--TVAMVNEKGSELQHLRVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGS 1065
              P +  +  T  +V ++   LQ  RV  +DN+  I  GMR LLE WGC+V TA      
Sbjct: 724  RAPKARPEPSTTELVLQR---LQGARVWVLDNDTAICAGMRTLLEGWGCKVITALSEEDL 780

Query: 1066 LKALEG-QWIPDVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIES 1124
             + ++      D++++DY LDNG TG++V+     R       ++I+A+ + ++   +  
Sbjct: 781  ARQVDNFHAEADLMIADYHLDNGHTGIDVVATVNARRASPLPALMITANYSNELKQQVRE 840

Query: 1125 SGFRFMAKPIKPLKLRALL 1143
             G   M KP++P+KL+  +
Sbjct: 841  LGHMLMHKPVRPMKLKTAM 859



 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 13/120 (10%)

Query: 629 LLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCG 688
           LLQ A++++ QG+A+V  +  L  WN+R+LEL    P  I+  RP  +V+  +++  L  
Sbjct: 218 LLQRAVDNLSQGVAMVSAEGALELWNRRFLELCGLAP--IEAHRPFEEVMA-DSELTLLT 274

Query: 689 PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFVMSFTDITV-FREAE 747
           P +  D   R +  LEQ           DGRV+E++ + +P GGFV +FTDIT  +R AE
Sbjct: 275 P-NSRDARGRPIRELEQRL--------FDGRVLEIRTHALPTGGFVNTFTDITERYRHAE 325



 Score = 52.4 bits (124), Expect = 2e-10
 Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 22/237 (9%)

Query: 599 TSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYL 658
           T AL     +L+    ++ +A    + +   L  AIE I     + D+  R+V +N+R+ 
Sbjct: 68  TDALNQAMAELKGSNQLLSDARLRAETAHQHLVDAIESISDAFVLFDRDQRIVLFNRRFK 127

Query: 659 ELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTSHTSSRVRADG 718
            L+      I  G  +A+V R     GL               H  +G   T  R+  +G
Sbjct: 128 SLWTRTRARINAGTRLAEVRRLAESTGLIVE-----------EHRGKGDEPTVYRLN-NG 175

Query: 719 RVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQLVTA 778
           R ++V   P   GG V+ +TDIT  + +E   +      + R+LQR ++       +V+A
Sbjct: 176 RWVQVSERPTREGGLVILYTDITEVKVSETMRREQALAQKSRLLQRAVDNLSQGVAMVSA 235

Query: 779 TQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESALG 835
               E  ++   RFL       + P+ A R F     EV  ++E+  L  +   A G
Sbjct: 236 EGALELWNR---RFLELCG---LAPIEAHRPF----EEVMADSELTLLTPNSRDARG 282