Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., Na+/proline symporter from Pseudomonas stutzeri RCH2

 Score = 1075 bits (2780), Expect = 0.0
 Identities = 580/1164 (49%), Positives = 798/1164 (68%), Gaps = 37/1164 (3%)

Query: 1    MQGWLVIPVSLAYLGVLFLIAWYGDRQTRWLA-NWRPWIYSLSIAVYCTSWTFYGTVGQA 59
            + G L+  V+L Y+ +LF IA+YGDR    ++   RPW+YSLS+AVYCTSWTF+G VGQ+
Sbjct: 3    LSGGLIAAVALVYMAILFAIAFYGDRNRDSMSPRLRPWVYSLSLAVYCTSWTFFGAVGQS 62

Query: 60   SVNPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTV 119
            +   W+FLPIY+ PIL+ +F   V+ ++I+I+K+E+ITS+ADFIAARYGKSQ LAV VT+
Sbjct: 63   TEQLWAFLPIYLGPILLMLFAPHVIQKMIMISKQENITSIADFIAARYGKSQVLAVVVTL 122

Query: 120  IAVLGILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHID 179
            I ++G+LPYIALQL+GI +G+N+++   +   G      +  V + LALFT+LFGTR++D
Sbjct: 123  ICLVGVLPYIALQLKGIVLGVNVLSGINVEAAGTGTRDTALIVSIVLALFTILFGTRNLD 182

Query: 180  NTEHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG------LELSTIAASTYQAPN 233
             TEHHRGM++AIAFES+VKL+AFL VG F+ +  +   G       +   +A    +  N
Sbjct: 183  VTEHHRGMVLAIAFESLVKLLAFLAVGAFVTFGLYNGFGDLFNRAHDAPELADFWSENVN 242

Query: 234  WPTLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTG 293
            W  +L+ T + M+AIVCLPRQFH  VVEN  P+D   ARW+FP+YL+L ++FV+PIA  G
Sbjct: 243  WAAMLVQTTVAMMAIVCLPRQFHVSVVENIEPRDFRLARWVFPLYLVLAAVFVVPIALAG 302

Query: 294  QGLLP-NTSPDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMP 352
            Q LLP   +PD+FVISLP+      +ALLAF+GG SAA+GMVIV+++AL+ MVSND+++P
Sbjct: 303  QMLLPAGVTPDSFVISLPLAELHPWLALLAFIGGASAATGMVIVASVALSTMVSNDMLLP 362

Query: 353  LLLRRMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAIT 412
             LLRR   ++R    F   ++ +RR  I+ +L  A+  Y +L S  SL+ IG ++F+AIT
Sbjct: 363  WLLRRQE-AERPFEAFRHWMLSVRRITIVAILLLAYVSYRLLGSTASLATIGQIAFAAIT 421

Query: 413  QFAPAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSAT-----DMLAGDASNNVLLWVI 467
            Q APA+ G +YW++ NR+GV+ GL  G  +W  TL+        DM  G      L W+ 
Sbjct: 422  QLAPAMVGALYWKQANRRGVFAGLTAGAAIWFYTLILPLLGWPLDMFPG------LSWMY 475

Query: 468  TPPDWLVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTPLPENENM 527
                  +  GL     G+ LS+  N   +  VS++T+  ++E  QA+ F+G  +      
Sbjct: 476  NGG---LGFGLSGLTLGVTLSLIGNATLFFWVSILTQTHVAEHWQASRFIGQEITSPTGA 532

Query: 528  SLYQSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASSALIRHTERVLAG 587
                + V V +L  LASRFVG  R   +F ++  +  +   P  QA    I HTER+LAG
Sbjct: 533  RRLLA-VRVEDLLTLASRFVGAERAEQSFQRFARRHGQDFTPKLQADGQWIAHTERLLAG 591

Query: 588  VFGASSAKLVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQ 647
            V GASS + V+ +AL+GR MQ+++V  IV EASE+  F+R LLQGAIE+I QGI+VVD+ 
Sbjct: 592  VLGASSTRAVVKAALEGRDMQVDDVVRIVGEASEVLQFNRALLQGAIENITQGISVVDQS 651

Query: 648  LRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGT 707
            LRLVAWN RYLELFE+P GL+ +GRPIAD+IR+NA++GLCGPGDP+ HV +R+Y + QG 
Sbjct: 652  LRLVAWNHRYLELFEYPDGLVYIGRPIADIIRYNAERGLCGPGDPDTHVAKRLYWMRQGR 711

Query: 708  SHTSSRVRADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLE 767
            +HTS R+  +GRV+E+ GNPMPGGGFVMSF+DIT +REAE++LK ANE LE+RV +RT E
Sbjct: 712  AHTSERLFPNGRVVELIGNPMPGGGFVMSFSDITAYREAERALKDANEGLEQRVSERTQE 771

Query: 768  LEKLNKQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLS--EVAKEAEVQK 825
            L +LN+ L+ A   +E  +QSK+RFLAAVSHDLMQPLNAARLF+++LS  + A   E Q+
Sbjct: 772  LSQLNQALIEAKSTAEAANQSKTRFLAAVSHDLMQPLNAARLFSAALSHQQSALPREAQE 831

Query: 826  LAHHIESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQ 885
            L  H++S+L +AEDLI+DLLDISRLESG++    + F +  +   L  EF+ LA +QGV 
Sbjct: 832  LVQHLDSSLRSAEDLITDLLDISRLESGRVTPDRNPFPLATLFDTLGTEFTVLAREQGVN 891

Query: 886  FSLVPSLLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGI 945
            F +  S L V SD +LLRRV+QNFLTNAFRY   G+V+LGVRR     +R++VWD G GI
Sbjct: 892  FRVHGSKLRVDSDIRLLRRVLQNFLTNAFRY-AKGRVVLGVRRQG-ASLRLEVWDRGPGI 949

Query: 946  EQDKQQEIFEEFNR--GGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003
             QDK + IFEEF R    Q R+++GLGLGLAI+ G+ HVL H + +RSWPG+GSVFS+T+
Sbjct: 950  PQDKLKVIFEEFKRLDSHQTRAEKGLGLGLAIADGLCHVLEHPLEVRSWPGKGSVFSVTV 1009

Query: 1004 DRAQPMPSSLTQTVAMVNE---KGSELQHLRVLCVDNEPDILVGMRDLLERWGCEVKTAT 1060
                P+  +L+Q   +V     + S L   +VLC+DNE  ILVGM  LL RWGC+V TA+
Sbjct: 1010 ----PIARALSQPRPVVKRGEPQHSALTGTQVLCIDNEDSILVGMSSLLTRWGCQVWTAS 1065

Query: 1061 DIHGSLKALEGQWIPDVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIISADRNPDILD 1120
            +       L     P ++L DY LD G+TG E++   R RLG+   GV+ISAD  P+++ 
Sbjct: 1066 NRDECEALLAEDIRPQLVLVDYHLDEGQTGTELMAWLRTRLGEPVPGVVISADGRPELIA 1125

Query: 1121 GIESSGFRFMAKPIKPLKLRALLN 1144
             I +SG  F+AKP+KP  LRAL++
Sbjct: 1126 AIHASGLDFLAKPVKPAALRALMS 1149