Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1141 a.a., sensor histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  913 bits (2360), Expect = 0.0
 Identities = 517/1163 (44%), Positives = 749/1163 (64%), Gaps = 52/1163 (4%)

Query: 6    VIPVSLAYLGVLFLIAWYGDRQTRWLAN----WRPWIYSLSIAVYCTSWTFYGTVGQASV 61
            V  +++ Y+ +LFL+AW  +R   W +      + WIY LS+AVYC+SW+F GTVGQ++ 
Sbjct: 7    VAVIAVFYVFLLFLLAWGAER---WFSGVTKKLQIWIYGLSLAVYCSSWSFLGTVGQSAG 63

Query: 62   NPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTVIA 121
            + WSFLPI++ PIL+F FG+ +L ++++++K ++ITS+ADFIAARYGKSQGLA  VT+IA
Sbjct: 64   DLWSFLPIFLGPILIFTFGFGMLRKMVVVSKAQNITSVADFIAARYGKSQGLAALVTLIA 123

Query: 122  VLGILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHIDNT 181
            + GI+PYIALQL+ +   LN+       + G     V+  + + LA+F +LFGTR +D T
Sbjct: 124  LFGIMPYIALQLKAMVASLNLFQEAGQPLDGMS---VALIISVVLAVFAILFGTRKLDAT 180

Query: 182  EHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDGLELSTIAASTYQAPNWPTLLIHT 241
            EH+ GMM+AIAFES+VKL AFL VG+ I++  +  DG       A        P L +  
Sbjct: 181  EHNPGMMLAIAFESLVKLAAFLLVGLVISFGVF--DGFSDIWQQADEAGIIQHPKLRLEA 238

Query: 242  LLT-----MIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTGQGL 296
            +L      + A +C+PRQFH MVVE      L   RW+FPVY+ L  LFV P+A  G+ L
Sbjct: 239  ILPDLVVGIAAFLCMPRQFHVMVVECAGEGVLRRGRWIFPVYIALFGLFVAPLALAGKLL 298

Query: 297  LPNTSP-DTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMPLLL 355
            L ++ P D++VI+LP+   A  +A++A LG  SAA+GMVIV+ + ++IM+SN+ ++PL+L
Sbjct: 299  LGDSVPADSYVINLPLALNADGLAIVALLGTLSAATGMVIVAVVTISIMISNEWLVPLML 358

Query: 356  RRMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAITQFA 415
            R  R+ ++    FS  L+  RR  I+++L   +  +L L    SL+ +G L+F A  Q A
Sbjct: 359  RSGRIRKKNFAQFSQFLLNARRLAIVIILGIGYLSFLYLADSDSLAHLGMLAFGAFAQLA 418

Query: 416  PAIFGGMYWREGNRKGVYVGLAVGFTLWL-ITLMSATDMLAGDASNNVLLWVITPPDWLV 474
            PA+ GG+YW+ GNR GV++GLA GF LW+ I L  A + +A    ++V         WL+
Sbjct: 419  PALVGGLYWKHGNRAGVFLGLAAGFGLWVWILLQGAGERVASAGLSDV---------WLL 469

Query: 475  ALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTPLPENENMSLYQSRV 534
            +    +     LL++ +N++ Y+  S+  RA + ER+QA++FV +P       +     +
Sbjct: 470  SYISPNVS-DTLLAIMVNSVFYVLGSIWFRAGVVERIQASSFV-SPGELKTAGNRRTGPI 527

Query: 535  TVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASSALIRHTERVLAGVFGASSA 594
            +  +L +L SRFV  TR   +F+++  +       N+ AS  LI HTE +L+GV GASSA
Sbjct: 528  SQQDLLILVSRFVSPTRAYESFSRFSPEAVNRDSWNKAASPELIAHTEHLLSGVLGASSA 587

Query: 595  KLVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWN 654
             LVL S + GR + L+EV ++VDEAS     S+ +L+GAIEH  +GI+VVDK L LVAWN
Sbjct: 588  ALVLDSVIAGRDLALDEVLSLVDEASSKVILSQEMLRGAIEHAYEGISVVDKDLNLVAWN 647

Query: 655  QRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTSHTSSRV 714
             RY EL+++P   +Q G PI++VIR NA +G CG GD E+ V RRV H+  GT HTS R 
Sbjct: 648  ARYGELYQYPDNFLQPGMPISEVIRFNAARGYCGVGDIEEQVERRVQHMRNGTPHTSERE 707

Query: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774
            R+DG+VI++QGNPMP GGFVM+FTDIT +R  E++LK +NETLE RV +RT EL  LN Q
Sbjct: 708  RSDGKVIKIQGNPMPDGGFVMTFTDITQYRAQERALKESNETLESRVKERTYELAMLNSQ 767

Query: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAK-EAEVQKLAHHIESA 833
            L+ A  + E  + SKSRFLAAV HDLMQPLNAARLF +SLS+ +  + E +    H+ S+
Sbjct: 768  LLEAKAQEEMANASKSRFLAAVGHDLMQPLNAARLFTASLSQYSNLDDEARTTLSHVNSS 827

Query: 834  LGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPSLL 893
            L  A +L++DLLDIS+L+SG ++++   FA+ D+LS L  EF A+     ++F++V S +
Sbjct: 828  LKIAGELLTDLLDISKLDSGMVEVNRRDFAVSDILSGLAVEFDAMGKDNQIRFAMVSSSV 887

Query: 894  WVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDKQQEI 953
             ++SDP LLRRV+QNFLTNA+RY   G+V+LG R    G++ I V D G GI++ +  EI
Sbjct: 888  TINSDPALLRRVLQNFLTNAYRYARGGRVLLGCRH-RPGELEIQVLDTGCGIDERELHEI 946

Query: 954  FEEFNRGGQVRSD--QGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQPMPS 1011
            F+EF R     S    GLGLGLAI+  I+ VLGH I + S  G+GSVFSI+      +P 
Sbjct: 947  FKEFKRLSNPHSKGVSGLGLGLAIADRISKVLGHDIKVASVLGRGSVFSIS------VPL 1000

Query: 1012 SLTQTVAMVNEKGSELQHL---RVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGS--- 1065
              T T  +   + + LQ L   +VLC+DNE  IL G+  LL RW CEV  A D+  +   
Sbjct: 1001 GKTVTAPVPTRRPTVLQPLAGVKVLCIDNEEAILAGLESLLRRWQCEVICARDLGDARIK 1060

Query: 1066 --LKALEGQWIPDVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIE 1123
              LK L     PD++L+DY LD+G+ G++ +   R   G+   G++I+A+   D+++ ++
Sbjct: 1061 LGLKGL----APDIVLADYHLDDGQNGVDAMDGIRALYGEHLPGILITANTRKDLVEDVQ 1116

Query: 1124 SSGFRFMAKPIKPLKLRALLNSL 1146
              G+ +MAK +KP  LRAL++SL
Sbjct: 1117 RRGYHYMAKMVKPAALRALISSL 1139