Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1179 a.a., sensory box sensor histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  765 bits (1975), Expect = 0.0
 Identities = 459/1189 (38%), Positives = 688/1189 (57%), Gaps = 76/1189 (6%)

Query: 4    WLVIPVSLAYLGVLFLIAWYGDRQTRWLANWRPWIYSLSIAVYCTSWTFYGTVGQASVNP 63
            W +  +S+AYL VLF++A +G  Q       RPW+YSLS+ V CTSW FYGTVGQA+   
Sbjct: 22   WWISVISIAYLAVLFIVAQWGQNQPFGQWRKRPWVYSLSLGVCCTSWAFYGTVGQAATTG 81

Query: 64   WSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTVIAVL 123
                PIYI  I+  V  W +L R + I K +++TS+ADFIA R+ +S  +A +V ++++L
Sbjct: 82   AWLAPIYIGSIVCLVLAWPMLMRTLHIVKSQNLTSIADFIACRFDRSPKIAASVAMVSLL 141

Query: 124  GILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHIDNTEH 183
            G +PYIALQLR I+        DL+T         ++ V + L +F++LFGTR +  ++ 
Sbjct: 142  GTIPYIALQLRAISTSF-----DLLTGTFQSGISTAFIVTIVLIIFSILFGTRQLSASKQ 196

Query: 184  HRGMMMAIAFESIVKLVAFLCVGVFIAYLAWR--TDGLELSTIAASTYQAPNWPTLLIHT 241
            ++G+++AIAF S+VKL+A   VG+F  +  +   +D L       ++  A +   +L   
Sbjct: 197  NQGLVLAIAFSSVVKLLALTTVGIFATFYIFDGFSDLLTRGQALPTSKDANSLYFVLSQI 256

Query: 242  LLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTGQGLLPNTS 301
            LL  I I  LP++FH M++EN   ++L +ARW+ P+YLLLM+ F+LPIA  GQ   P  S
Sbjct: 257  LLGAITIYALPQEFHMMMIENHHAKELKSARWMVPLYLLLMNAFILPIALAGQLSFPGGS 316

Query: 302  --PDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMPLLLRRMR 359
               DT+V++LP+F     + +L +LGG +AA+ MVIV+ I L+ M+S +++ PLLLR  R
Sbjct: 317  VDADTYVLTLPLFYQQAWLGVLVYLGGLAAATAMVIVAAIVLSTMISTEILTPLLLRLPR 376

Query: 360  LSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAITQFAPAIF 419
             S +     +G+L+ +RR  I  +L  A+ F   +D    L++IG LSF  ++QFAPA  
Sbjct: 377  FSSQQTPQLAGILLNLRRIAIAAILLSAFAFERYIDQQNHLASIGLLSFVLLSQFAPAAI 436

Query: 420  GGMYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNVLLWVITPP---DWLV-- 474
            G +YWR  N +G + G+ +G  +WL TL+        DA+     WVI  P    WL   
Sbjct: 437  GALYWRRANTQGAFWGMLLGSLVWLYTLLLPATF--PDAN-----WVIHGPWHIGWLAPH 489

Query: 475  AL----GLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTPLPENENMSLY 530
            AL    GL +   G+  S+ +N   ++ +S     S+ E LQA  FV      N      
Sbjct: 490  ALFGLNGLDNISHGLFYSLLVNIGSFVLISHFREQSVGELLQADVFV------NRKQLQL 543

Query: 531  QSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASSALIRHTERVLAGVFG 590
            +  ++V +L  L  RF+ +       A+  ++Q  + L +++    L+ +T   L+GV G
Sbjct: 544  ERHLSVSDLASLLHRFINKEEADALMAK--ARQLGSELSSRREE--LVDYTRLKLSGVLG 599

Query: 591  ASSAKLVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRL 650
            ++S ++V+ +A + +++ LE+V +IVDEA+++++F+R LLQ  +E+I QGI+VVD  +RL
Sbjct: 600  SASTRMVMNAASRAQQVPLEDVVSIVDEANQIFEFNRELLQSGVENIEQGISVVDADMRL 659

Query: 651  VAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTSHT 710
            VAWN+RY+EL ++P   ++ G PI  ++R+N ++G+    +  + V +R+ H+  G+ H 
Sbjct: 660  VAWNKRYIELLDYPKDYVKAGIPIEKLLRYNIERGIIVGDEAHELVEKRLAHMRSGSPHH 719

Query: 711  SSRVRADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEK 770
              R   DGRV+E++G  MPGGGFV +F+DIT   +AE++L+ ANETLE+RV  RT EL K
Sbjct: 720  FQRTMHDGRVLEIRGQAMPGGGFVSTFSDITAHIQAEKALQQANETLEKRVESRTRELAK 779

Query: 771  LNKQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHI 830
                   A   +E  + SK+RFLAA SHDLMQP NA  LF   L +     E+Q LA HI
Sbjct: 780  -------AKAEAEAANSSKTRFLAAASHDLMQPFNALTLFTEMLKQRVTSTELQDLATHI 832

Query: 831  ESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVP 890
            E +L   E L+SDL++ISRL+S  +      FAI D+LS L  EF  L+ +QG++F    
Sbjct: 833  EDSLNVVESLLSDLVEISRLDSSSLKTEQSQFAIDDLLSTLVNEFRVLSKQQGIEFGYQF 892

Query: 891  SLLWVHSDPKLLRRVIQNFLTNAFRYNPNG---------------------------KVI 923
            S  +V SD +LLRR+IQNFL+NAF Y+P G                           +V+
Sbjct: 893  SSCFVQSDQRLLRRIIQNFLSNAFHYSPAGALNQIQSATRVKLEGGESLTSDVEFMPRVV 952

Query: 924  LGVRRVATGQVRIDVWDNGIGIEQDKQQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVL 983
            LGVRR     + I VWDNG GI  +KQQ IF EF R  Q R   GLGLGLAI   IA +L
Sbjct: 953  LGVRR-RQDSLLIQVWDNGPGIPAEKQQAIFGEFERLEQTREIPGLGLGLAICDRIAKLL 1011

Query: 984  GHHISMRSWPGQGSVFSITLDR-AQPMPSSLTQTVAMVNEKGSELQHLRVLCVDNEPDIL 1042
            G  I + S  G+G+ FS+ + R  Q  P+     +   +E   +   ++VL +DN+  +L
Sbjct: 1012 GIRIYLHSELGKGTCFSVEVPRIRQQKPAGNVVKLRRDDEAIGDSFDIQVLVIDNDELML 1071

Query: 1043 VGMRDLLERWGCEVKTATDIHGSLKALEGQWIPDVILSDYRLDNGRTGLEVLQQC----R 1098
              +  LL  WGC+V TA D   +L  LE    P +IL+DY LD+ + G+ ++Q      R
Sbjct: 1072 KAISSLLLGWGCKVLTARDKASALAQLEVSKPPRLILADYHLDDDQNGVSLVQSLLEHPR 1131

Query: 1099 LRLGDCFAGVIISADRNPDILDGIESSGFRFMAKPIKPLKLRALLNSLS 1147
            L L      +I SAD +  +     S+ F F+ KP+K   L+ L+  LS
Sbjct: 1132 L-LQARPTCIICSADPSEAVRQHTSSANFGFVRKPVKATALKRLIKQLS 1179