Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1166 a.a., integral membrane sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  790 bits (2039), Expect = 0.0
 Identities = 457/1174 (38%), Positives = 702/1174 (59%), Gaps = 70/1174 (5%)

Query: 4    WLVIPVSLAYLGVLFLIAWYGDR-QTRWLANWRPWIYSLSIAVYCTSWTFYGTVGQASVN 62
            WL++ +S++Y+G+LFL+A+ GD+ + +W A     IYSLS+ VYCTSW F GT GQA+ N
Sbjct: 5    WLLVAISISYIGLLFLMAFLGDKYRGKWFAGQHTIIYSLSLGVYCTSWGFLGTAGQAANN 64

Query: 63   PWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTVIAV 122
             +++LP+YIAPIL+F+F W  + R+I +  + +ITS+AD +AAR+GKS  LAV VT +A+
Sbjct: 65   SFAYLPVYIAPILLFIFAWPFIQRVIRVCLKLNITSIADLLAARFGKSPLLAVVVTFVAL 124

Query: 123  LGILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHIDNTE 182
             G LPYIALQ + I     I+  D +         +   V L LA FT++FG R ID TE
Sbjct: 125  FGTLPYIALQQKAIVNSYEILRQDHL----LSSWQLGLVVSLILAGFTIVFGVRAIDVTE 180

Query: 183  HHRGMMMAIAFESIVKLVAFLCVGVFIAYL-------AWRTDGLELSTIAASTYQAPNWP 235
             H GMM+AIAFES VKL+A+L +G+F+++         WR    E+  + A  +  PN+ 
Sbjct: 181  RHPGMMLAIAFESFVKLIAYLTIGIFVSFFLFDSPMDIWR-QATEIKPLEAE-FNYPNFI 238

Query: 236  TLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTGQG 295
            +L    ++ M A +CLPRQF  ++VE +  + +  +RW FP+Y+L+ + F  P+   G  
Sbjct: 239  SLFGLLIIVMSAFLCLPRQFQVLIVELKSQKHVLWSRWTFPLYVLVFAFFATPLGQAGNI 298

Query: 296  LLPNT-SPDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMPLL 354
            L  ++   D +V+ LPVF+G   + L +FLG  SAAS MVI+STIAL+ M+SN++V P L
Sbjct: 299  LYGDSLQSDAYVLFLPVFSGDIWLGLFSFLGAISAASSMVIISTIALSTMLSNEIVFPTL 358

Query: 355  LRRMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAITQF 414
             +   +       F   L+ IR+ L+LL++F ++G +L+     +L+++G ++F AI Q 
Sbjct: 359  FKINNIQSNDFHKFRSHLLNIRKALVLLVIFMSYGMFLIAPP-DTLASLGEVAFGAIAQI 417

Query: 415  APAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNVLLWVITPPDWLV 474
             PA+F    WR     GV VG++ GF LWL+  +     L G                  
Sbjct: 418  GPALFAAFLWRRVTLIGVLVGISSGFALWLVLNLLPQLGLYGHP--------------FA 463

Query: 475  ALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTP-----LPENENMSL 529
              G        L+ + +N +    VS  TR S+ E++Q   F+  P     LPE      
Sbjct: 464  GSGYSMTTMATLVGLFVNVMAIWLVSSFTRQSVHEQMQIGHFIERPELDKALPE------ 517

Query: 530  YQSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASSALIRHTERVLAGVF 589
                V   ELE+L +RFVG+ +    F  ++S Q + +      + ALI  TE +LA V 
Sbjct: 518  VPKHVNPTELELLVARFVGKDKAAQGFYSFFSCQPQPIQDKNAHNQALIFFTENMLASVM 577

Query: 590  GASSAKLVLTSALQGRKMQLEEVATIVDEA-SELYDFSRGLLQGAIEHIGQGIAVVDKQL 648
            G++SA+LVL+ AL GR + +E+VA +V+EA S   +FSR +L  AIE+  +GI+V+DK L
Sbjct: 578  GSASARLVLSCALHGRDIAIEDVAQLVEEASSHRKEFSRSVLHSAIENASEGISVIDKDL 637

Query: 649  RLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTS 708
             LVAWNQ+YL LF +P  L+ +G P+  +I +N + G     + ++ V RR+  L QG+ 
Sbjct: 638  NLVAWNQQYLSLFNYPDDLVYIGCPVRQLIEYNLKFGKGYIPNLDEQVERRLNFLRQGSR 697

Query: 709  HTSSRVRADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRT--- 765
            H + R++ DG+ I +QGNP+PGGGFVM F+DI+++REAE+ LK  N  LE RV +RT   
Sbjct: 698  HATERIQPDGKTIRIQGNPIPGGGFVMIFSDISMYREAEKLLKEKNLDLEARVFERTKRL 757

Query: 766  ----LELEKLNKQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEA 821
                L+L K N++L  A Q+ E+  Q KS++L A SHDL+QPL+AARLF+S+  +  + +
Sbjct: 758  EQANLQLAKSNEELAEALQKVEQAHQKKSQYLKACSHDLLQPLSAARLFSSAFVQGGQLS 817

Query: 822  EVQK-LAHHIESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAA 880
              QK    +I++AL  A +L+ DL ++SR+E G +      FA+ +VL +L  EFSA+A+
Sbjct: 818  NKQKQQIGYIDNALQVANELLLDLNEVSRIEGGTVVPEITEFALQEVLDSLVEEFSAMAS 877

Query: 881  KQGVQFSLVPSLLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWD 940
                +F  + + LWV SD  LLRR++QN ++NAFRY   G+++LG RR     + I V D
Sbjct: 878  TTQAEFKCIKTKLWVRSDKVLLRRILQNLISNAFRYAGGGRILLGCRRHG-DTIAIQVVD 936

Query: 941  NGIGIEQDKQQEIFEEFNRGGQVRSD--QGLGLGLAISKGIAHVLGHHISMRSWPGQGSV 998
            +G GI  DKQ  IFE+F R      +   GLGLGL I++G+A ++ H +++ S   QGS+
Sbjct: 937  DGPGIPADKQAVIFEQFTRLQHSGHEGVNGLGLGLNIAQGLAELMQHRLTLSSQVNQGSI 996

Query: 999  FSITLDRAQPMPSSLTQTVAMVNEKGSE-----LQHLRVLCVDNEPDILVGMRDLLERWG 1053
            FS++L  AQP          +V E+ S+     L  ++VLCVD++P++L GM +LL+ W 
Sbjct: 997  FSLSLSVAQP---------KLVEEQTSQPDILTLNGVKVLCVDDDPNVLAGMEELLKGWK 1047

Query: 1054 CEVKTATDIHGSLKALEGQWIP--DVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIIS 1111
            C V TA+      KA   Q+    D++L DY+LDN   GL+++ + +         ++I+
Sbjct: 1048 CLVHTASSAQ-QAKACVSQFAGKIDIVLMDYQLDNNLNGLDLMAELQALSSRPIPAILIT 1106

Query: 1112 ADRNPDILDGIESSGFRFMAKPIKPLKLRALLNS 1145
            A  + +++   +  G+ ++ K IKP+ LRA++++
Sbjct: 1107 ATIDEEVVQRTKELGYGYLRKIIKPIALRAVMSA 1140