Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1140 a.a., integral membrane sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  920 bits (2377), Expect = 0.0
 Identities = 516/1149 (44%), Positives = 743/1149 (64%), Gaps = 31/1149 (2%)

Query: 9    VSLAYLGVLFLIAWYGDRQT-RWLANWRPWIYSLSIAVYCTSWTFYGTVGQASVNPWSFL 67
            ++L Y+ +LFL+AW  +R   R     + WIY LS+AVYC+SW+F GTVGQ++ + WSFL
Sbjct: 10   IALLYVSLLFLLAWGAERWFGRITKKIQTWIYGLSLAVYCSSWSFLGTVGQSAQDLWSFL 69

Query: 68   PIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTVIAVLGILP 127
            PI++ PIL+F FG+ +L ++++++K ++ITS+ADFIAARYGKSQ +A  VT+IA+ GI+P
Sbjct: 70   PIFVGPILIFTFGFGLLRKMVIVSKAQNITSVADFIAARYGKSQTIAAIVTLIALFGIMP 129

Query: 128  YIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHIDNTEHHRGM 187
            YIALQL+ +   LN+  P+      Y  + VS  V   LA+F +LFGTR +D TEH+ GM
Sbjct: 130  YIALQLKAMVFSLNLFQPEDAQ---YDGAWVSLIVTGILAMFAILFGTRKLDATEHNPGM 186

Query: 188  MMAIAFESIVKLVAFLCVGVFIAYLAWRTDGLELSTIAASTYQAPNWPTLLIHTLLT--- 244
            M+AIAFES+VKL AFL VG  I++  +  DG       A+  Q  N P L +  L+    
Sbjct: 187  MLAIAFESLVKLAAFLLVGCVISFGFF--DGFGDIWAQATERQLINNPELRLENLMPQLL 244

Query: 245  --MIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTGQGLLPNT-S 301
              M A +C+PRQFH M+VE +    L  A++LFP+YL+L  +FV P+A  G+ +L ++ S
Sbjct: 245  VGMAAFLCMPRQFHVMMVECKDEPTLVKAKYLFPLYLILFGMFVAPLALAGKLMLGDSVS 304

Query: 302  PDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMPLLLRRMRLS 361
             DT+VI+LP+      +A++A LG  SAA+GMVIV+ + +++MVSN+ ++PL+L   ++ 
Sbjct: 305  ADTYVINLPLALDQPMLAVIALLGTLSAATGMVIVAVVTISVMVSNEWLVPLMLHSGKIR 364

Query: 362  QRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAITQFAPAIFGG 421
            Q+    FS  L+  RR  I+L+L   +  YL   +  SLSA+G LSF A  Q APA+ GG
Sbjct: 365  QKNFSQFSQFLLNARRIAIVLILGLGYFSYLSFMNSDSLSALGMLSFGAFAQLAPALIGG 424

Query: 422  MYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNVLLWVITPPDWLVALGLKSA 481
            MYW+ GNR GVY+GL VGF LW   L+       G     + L        L ++     
Sbjct: 425  MYWKHGNRGGVYLGLIVGFGLWCYILVQGMSDSQGVFGGELAL--------LDSINPNIR 476

Query: 482  DWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTPLPENENMSLYQSRVTVGELEM 541
            D  +L ++  N  CY+  S+  RA ++ER+QA+AFV TP       +   S ++  +L +
Sbjct: 477  D--ILTALLANLACYVLGSIWFRAGVAERIQASAFV-TPGELKNTSNRKASPISQQDLLI 533

Query: 542  LASRFVGRTRVRNAFAQYWSQQRETLLPNQQASSALIRHTERVLAGVFGASSAKLVLTSA 601
            LASRFV  TR   +F+++  +   +   ++ AS  LI HTE +LAGV G SSA LV+ S 
Sbjct: 534  LASRFVSPTRAYESFSRFSDEAVRSDSWHKVASPELIAHTEHMLAGVLGGSSASLVMDSV 593

Query: 602  LQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELF 661
            LQGR + L+EV ++VDEAS     S+ +L+GAIEH  +G++VVDK+L LVAWN +Y+EL+
Sbjct: 594  LQGRDLALDEVFSLVDEASSKIILSQDMLRGAIEHAYEGMSVVDKELNLVAWNYKYVELY 653

Query: 662  EFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVI 721
            ++P   +Q G PIADV+R NA++G CGPGD E+ V +RV H+  GT H S R R DG+VI
Sbjct: 654  DYPEDFLQAGMPIADVVRFNAERGYCGPGDVEEQVAKRVQHMRNGTPHVSERERQDGKVI 713

Query: 722  EVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQLVTATQR 781
            ++QGNPMP GGFVM+FTDIT +RE  ++L+  NETLE RV +RT EL  LN QL+ A  +
Sbjct: 714  KIQGNPMPSGGFVMTFTDITQYREQARALQEVNETLEARVKERTYELALLNSQLLEAKAQ 773

Query: 782  SERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAK-EAEVQKLAHHIESALGAAEDL 840
             E  + SKSRFLAAV HDLMQPLNAARLF +SL++    + E +    H+ S+L  A +L
Sbjct: 774  EEIANASKSRFLAAVGHDLMQPLNAARLFTASLAQYPNLDQEGRTTLSHVNSSLKIAGEL 833

Query: 841  ISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPSLLWVHSDPK 900
            ++DLLDIS+L+SG ++++   F++ ++L  L  EF A+A   G++FS+V S   + SD  
Sbjct: 834  LTDLLDISKLDSGMVEVNRRDFSVAELLEGLAVEFDAMAKDYGIKFSMVASSSIISSDLS 893

Query: 901  LLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDKQQEIFEEFNR- 959
            LLRRV+QNFLTNA+RY    +V+LG R  A G + I V D G GI++ +  EIF+EF R 
Sbjct: 894  LLRRVLQNFLTNAYRYAKGNRVLLGCRHRA-GALEIQVNDTGCGIDEQELGEIFKEFKRL 952

Query: 960  -GGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQPMPSSLTQTVA 1018
               + +S  GLGLGLAI+  IA VLGH I + S  G GS+FSIT+   +    +L +   
Sbjct: 953  ENPESKSVSGLGLGLAIADRIARVLGHDIKVVSKLGLGSMFSITVPLGEKAKVALPK--- 1009

Query: 1019 MVNEKGSELQHLRVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKALEGQWI-PDV 1077
              N     L  ++VLC+DNE  IL G+  LL RW CEV  A+D+  +   L  + + PD+
Sbjct: 1010 KANPVMQPLAGVKVLCIDNEEAILAGLESLLSRWQCEVICASDLADARIKLGLKGVAPDI 1069

Query: 1078 ILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGFRFMAKPIKPL 1137
            +L+DY LD+G+ G++ +   R   G    G++I+A+   D+++ ++  G+ +MAK +KP 
Sbjct: 1070 VLADYHLDHGQNGVDAMDGIRALYGAHLPGILITANTRKDLVEDVQQRGYHYMAKMVKPA 1129

Query: 1138 KLRALLNSL 1146
             LRAL++SL
Sbjct: 1130 ALRALISSL 1138