Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1145 a.a., sensor histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  920 bits (2378), Expect = 0.0
 Identities = 514/1159 (44%), Positives = 756/1159 (65%), Gaps = 40/1159 (3%)

Query: 5    LVIPVSLAYLGVLFLIAWYGDRQTRWLAN----WRPWIYSLSIAVYCTSWTFYGTVGQAS 60
            +V  +++ Y+ +LFL+AW  +R   W +      +  IY LS+AVYC+SW+F GTVGQ++
Sbjct: 6    VVAVIAICYVSLLFLLAWGAER---WFSGVTKKLQVVIYGLSLAVYCSSWSFLGTVGQSA 62

Query: 61   VNPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTVI 120
             + WSF+PI++ PIL+F  G+ +L +++L++K ++ITS+ADFIAARYGKSQ LA  VT+I
Sbjct: 63   KDFWSFIPIFVGPILIFTLGFGMLRKMVLVSKAQNITSVADFIAARYGKSQTLAAIVTLI 122

Query: 121  AVLGILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHIDN 180
            A+ GI+PYIALQL+ +   LN+  P    + G     ++  +   LA+F +LFGTR +D 
Sbjct: 123  AMFGIMPYIALQLKAMVFSLNLFQPADDPLNGVT---IALLITALLAIFAILFGTRKLDA 179

Query: 181  TEHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG---LELSTIAASTYQAPNWPTL 237
            TEH+ GMM+AIAFES+VKL AFL VG+ I++  +   G    + S  +   +  P   TL
Sbjct: 180  TEHNPGMMLAIAFESLVKLAAFLLVGIVISFGVFDGFGDIWQQASDKSLIHHPNPRIETL 239

Query: 238  LIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTGQGLL 297
            +   L+ M A +C+PRQFH MVVE      L   RWLFP+YL L  LFV P+A  G+ +L
Sbjct: 240  MPELLVGMAAFLCMPRQFHVMVVECADESVLSKGRWLFPLYLALFGLFVGPLALAGKLIL 299

Query: 298  PNT-SPDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMPLLLR 356
             ++ + DT+VI+LP+      +A++A LG  SAA+GMVIV+ + +++MVSN+ ++P++LR
Sbjct: 300  GDSVAADTYVINLPLALDHPLLAVIALLGTLSAATGMVIVAVVTISVMVSNEWLVPVVLR 359

Query: 357  RMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAITQFAP 416
               + ++    FS +L+  RR  I+++L   +G YL L    SLS +G LSF A  Q AP
Sbjct: 360  TGNIREKNFSQFSQMLLNARRLAIVIILGLGYGSYLALADSDSLSHLGMLSFGAFAQLAP 419

Query: 417  AIFGGMYWREGNRKGVYVGLAVGFTLW---LITLMSATDMLAGDASNNV-LLWVITPPDW 472
            A+ GG+YW+ GNR GV++GL+VGF+LW   +++ M+     A   S+N+ LL  ITP   
Sbjct: 420  ALVGGLYWKHGNRAGVFLGLSVGFSLWFYIMLSGMTGNQSPAALMSSNIDLLDAITP--- 476

Query: 473  LVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTPLPENENMSLYQS 532
                 ++ A    L ++  N  CY+  S+  RA ++ER+QA+AFV +P     N S    
Sbjct: 477  ----NVRDA----LTALFANIACYVLGSIWFRAGVAERIQASAFV-SPGKLKNNASKKSG 527

Query: 533  RVTVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASSALIRHTERVLAGVFGAS 592
             ++  +L +LASRFV  TR   +F+++ ++  ++   ++ A+  LI HTER+LAGV GAS
Sbjct: 528  PISQQDLLILASRFVSPTRAYESFSRFSTEAVKSDSWHKAATPELIAHTERLLAGVLGAS 587

Query: 593  SAKLVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVA 652
            SA LV+ S LQGR + L+EV ++VDEAS     S+ +L+GAIEH  +G++V+D  L LVA
Sbjct: 588  SASLVMDSVLQGRDLALDEVFSLVDEASSKIMLSQDMLRGAIEHAYEGMSVIDSDLNLVA 647

Query: 653  WNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTSHTSS 712
            WN +Y+EL+++P G +Q G PI++VIR NA +G CG G  E  V +RV H+  GT HTS 
Sbjct: 648  WNYKYVELYQYPEGFLQQGMPISEVIRFNAARGYCGSGAIEQQVEKRVQHMRNGTPHTSE 707

Query: 713  RVRADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLN 772
            R R DG+VI++QGNPMP GGFVM+FTDIT +R+ E++L  ANETLE RV +RT EL  LN
Sbjct: 708  RQRKDGKVIKIQGNPMPDGGFVMTFTDITQYRQQERALLEANETLESRVKERTFELAMLN 767

Query: 773  KQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAK-EAEVQKLAHHIE 831
             +L+ A  + E  + SKSRFLAAV HDLMQPLNAARLF +SLS+    + E +    H+ 
Sbjct: 768  SELLEAKAQEEMANASKSRFLAAVGHDLMQPLNAARLFTASLSQYPNLDREARTTLSHVN 827

Query: 832  SALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPS 891
            S+L  A +L++DLLDIS+L+SG +D++   FAI ++L+ L+ EF A+AA   ++F ++P 
Sbjct: 828  SSLKTAGELLTDLLDISKLDSGMVDVNRRDFAISELLNGLSVEFEAMAADNQIRFKMIPC 887

Query: 892  LLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDKQQ 951
               V+SDP LLRRV+QNFLTNA+RY   G+V+ G R   + ++ I V D G GI++ +  
Sbjct: 888  SATVNSDPSLLRRVLQNFLTNAYRYARGGRVLFGCRHRGS-ELEIQVLDTGCGIDEHETH 946

Query: 952  EIFEEFNRGGQVRSD--QGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQPM 1009
            EIF+EF R    RS    GLGLGLAI+  I+ VL H I + S  G+GSVFSIT+    P+
Sbjct: 947  EIFKEFKRLNNPRSKSVSGLGLGLAIADRISRVLNHGIQVSSQLGRGSVFSITV----PL 1002

Query: 1010 PSSLTQ-TVAMVNEKGSELQHLRVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKA 1068
              ++ Q  V  +      L  ++VLC+DNE  IL G+  LL RW CEV  A D+  +   
Sbjct: 1003 GETVRQPQVKALPSLLQPLSGIKVLCIDNEEAILAGLESLLSRWQCEVICAKDLADARIK 1062

Query: 1069 LEGQWI-PDVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGF 1127
            L  + + PD++L+D+ LD+G+ G++ +   R   G    G++I+A+   ++++ ++  G+
Sbjct: 1063 LGLKGVAPDIVLADFHLDDGQNGVDAMDGIRSLYGKDLPGILITANTRKELVEDVQRRGY 1122

Query: 1128 RFMAKPIKPLKLRALLNSL 1146
             +MAK IKP  LRAL++SL
Sbjct: 1123 HYMAKMIKPAALRALISSL 1141