Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 897 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  382 bits (980), Expect = e-110
 Identities = 236/651 (36%), Positives = 361/651 (55%), Gaps = 38/651 (5%)

Query: 5   LVIPVSLAYLGVLFLIAWYGDRQ-----TRWLANWRPWIYSLSIAVYCTSWTFYGTVGQA 59
           L++ +SLAY+ +LF +A+  +R+     T WL    P IY+LS++VYCT+WTFYG VG A
Sbjct: 6   LLVAISLAYVALLFGVAFVAERRAARGKTGWLR--APMIYTLSLSVYCTAWTFYGAVGYA 63

Query: 60  SVNPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTV 119
           + +   F+ IY+ P L+F+  W +L +L+ I + + +TS+AD I++RYGKS GLAV VT 
Sbjct: 64  ARSGLEFVTIYLGPTLVFIGWWWLLRKLVRIGRAQRVTSIADLISSRYGKSNGLAVLVTG 123

Query: 120 IAVLGILPYIALQLRGITMGLNIVAPDLMTVYGYQESHV--SWFVVLALALFTMLFGTRH 177
           +AV+   PYIALQL+ +++ L +   +   V       V    +V + LA+FT+LFGTR+
Sbjct: 124 MAVIASAPYIALQLQSVSLSLAVFDAESAEVMANPTGAVMDGLWVAIGLAIFTVLFGTRN 183

Query: 178 IDNTEHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG-------LELSTIAASTYQ 230
           +D  E H G++MAIA E+++KLVA L VGVF+ +     DG       L+ S ++A   +
Sbjct: 184 LDANERHHGVVMAIAVEAVMKLVALLAVGVFVVW--GLADGVGDILTRLDASPVSAWQVE 241

Query: 231 APNWPTLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIA 290
              W  L+    ++  A++CLPR F  MVVEN     L TA W FP YL+LMSLFV+PIA
Sbjct: 242 GGRWVGLI---FVSAAAVICLPRMFQVMVVENADESHLSTASWAFPAYLMLMSLFVIPIA 298

Query: 291 WTGQGLLP-NTSPDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDL 349
             G  L+P   +PD FV++LP+    + +A LAFLGG S+A+ MVIV+ IAL+ MVSN +
Sbjct: 299 VVGLDLMPAGANPDLFVLTLPLSQDQNMLAALAFLGGFSSATSMVIVAAIALSTMVSNHI 358

Query: 350 VMPLLLRRMRLSQRTHRHFSG----LLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGF 405
           +MP+ L    L        SG     ++  RR  I  +L   + ++ + +   +L+AIG 
Sbjct: 359 IMPVWL---SLQDGGKASVSGDVRRAMLFSRRISIAAVLGMGYAYFALSEGGEALAAIGL 415

Query: 406 LSFSAITQFAPAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNVL-- 463
           +SF    Q  PA+ GG++WR   R+G   GL  GF +W  T    +  + G    +++  
Sbjct: 416 ISFVGAAQVLPALLGGIFWRGATRRGAVAGLIAGFAVWAYTFYMPSLAVPGSVLADIVRD 475

Query: 464 ----LWVITPPDWLVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGT 519
               +  + P       GL      +L S+ LN   ++GVSL++  S  ERLQ A FV  
Sbjct: 476 GPLGMGFLRPHGLFGLTGLDPLVHALLWSMVLNAGLFLGVSLLSFPSPMERLQGAQFVNV 535

Query: 520 PLPENENMSLYQSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRET-LLPNQQASSALI 578
                   S    R    +L ++A R +G     N F+     Q +T  LP+   +   +
Sbjct: 536 FEHSTTPRSWAGGRAEAEDLLIMAQRILGPDEAHNVFSAAARAQGKTGYLPD--TTPEFL 593

Query: 579 RHTERVLAGVFGASSAKLVLTSALQGRKMQLEEVATIVDEASELYDFSRGL 629
              ER LAG  GA++A  ++     G  + + E+  + DE +++ ++S  L
Sbjct: 594 MDLERELAGSVGAATAHAMIAQINGGASVSVRELMAVADETAQMMEYSSQL 644



 Score = 79.7 bits (195), Expect = 9e-19
 Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 20/294 (6%)

Query: 731  GGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQLVTATQRSERESQSKS 790
            GG  +S  ++    +    +   +  LE +    + ELE    +L  A ++    S  K 
Sbjct: 618  GGASVSVRELMAVADETAQMMEYSSQLEAK----SRELEATATKLREANEKLTELSVQKD 673

Query: 791  RFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHI--ESALGAAEDLISDLLDIS 848
             FL+ +SH+L  P+ + R F+  L +   E EV++    I  + +L     L+ DLLD+S
Sbjct: 674  AFLSQISHELRTPMTSIRSFSEILMQGRLEPEVRRRYSSIIHDESLRLTR-LLDDLLDLS 732

Query: 849  RLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPSLL--WVHSDPKLLRRVI 906
             LE+G++ L+P    + D++    +  SA+   + ++    P      +++D   L +V 
Sbjct: 733  VLENGQVVLNPQQERLGDLIDRAISA-SAVGHARSLRVLRDPGQEDHVIYTDTDRLVQVF 791

Query: 907  QNFLTNAFRYNPNGKVILGVR-RVATGQVRIDVWDNGIGIEQDKQQEIFEEFNRGGQVRS 965
             N + N  +Y       L +  R   G +++D  DNG GI       IFE+F R      
Sbjct: 792  INIIANTIKYCDATDPELRIEVRAGEGMLQLDFIDNGSGIPARSHGLIFEKFARLDDQTK 851

Query: 966  DQGLGLGLAISKGIAHVLGHHISMRSWPGQ-GSVFSITLDRAQPMPSSLTQTVA 1018
              G GLGLAI + +   LG  I      GQ G+ F ++L      P  +++ VA
Sbjct: 852  AGGAGLGLAICREVMSKLGGSIDYLR--GQSGAAFRVSL------PMEISRAVA 897