Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1175 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella sp. ANA-3

 Score =  773 bits (1996), Expect = 0.0
 Identities = 457/1192 (38%), Positives = 689/1192 (57%), Gaps = 78/1192 (6%)

Query: 4    WLVIPVSLAYLGVLFLIAWYGDRQTRWLANWRPWIYSLSIAVYCTSWTFYGTVGQASVNP 63
            W +  +S+AYL VLF++A +G  Q       RPW+YSLS+ V CTSW FYGTVGQA+   
Sbjct: 14   WWISVISIAYLAVLFIVAQWGQNQAIDQWRKRPWVYSLSLGVCCTSWAFYGTVGQAATTG 73

Query: 64   WSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTVIAVL 123
                PIYI  I+  V  W +L R + I K +++TS+ADFIA R+ +S  +A +V ++++ 
Sbjct: 74   AWLAPIYIGSIICLVLAWPMLMRTLQIIKSQNLTSIADFIACRFDRSPKIAASVAMVSLF 133

Query: 124  GILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHIDNTEH 183
            G +PYIALQLR I+        DL+T         ++ V + L +F++LFGTR +  ++ 
Sbjct: 134  GTIPYIALQLRAISTSF-----DLLTGTFQSGISTAFIVTIVLIIFSILFGTRQLSASKQ 188

Query: 184  HRGMMMAIAFESIVKLVAFLCVGVFIAYLAWR--TDGLELSTIAASTYQAPNWPTLLIHT 241
            ++G+++AIAF SIVKL A   VG+F  +  +   +D L        + +  +   +L   
Sbjct: 189  NQGLVLAIAFSSIVKLFALTTVGLFATFYVFDGFSDLLARGQHLPPSSEGNSLYFVLSQI 248

Query: 242  LLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTGQGLLPNTS 301
            LL  I I  LP++FH M++EN   ++L  ARW+ P+YLLL++ FVLPIA  GQ   P  S
Sbjct: 249  LLGAITIYALPQEFHMMMIENHHAKELKAARWMVPLYLLLINAFVLPIALAGQISFPGGS 308

Query: 302  --PDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMPLLLRRMR 359
               DT+V++LP+F     + +L ++GG +AA+ MVIV+ I L+ M+S +++ PLLLR  +
Sbjct: 309  VDADTYVLTLPLFYQQAWLGILVYIGGLAAATAMVIVAAIVLSTMISTEILTPLLLRLPK 368

Query: 360  LSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAITQFAPAIF 419
             S +     +G+L+ +RR  I  +L  A+ F   +D    L++IG LSF  ++QF PA  
Sbjct: 369  FSSQQTPQLAGILLNLRRISIAAILLSAFAFERYIDQQNHLASIGLLSFVLLSQFFPAAV 428

Query: 420  GGMYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNVLLWV---------ITPP 470
            G +YWR    +G + G+ +G  +WL TL+        DA     LWV         +TP 
Sbjct: 429  GALYWRRATTQGAFWGMLMGSLVWLYTLLLPATF--PDA-----LWVTQGLLNIPWLTPT 481

Query: 471  DWLVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTPLPENENMSLY 530
                  GL +   G+L S+  N  C++ +SL+   S+ E LQA  FV      N      
Sbjct: 482  ALFGLTGLDNISHGLLYSLLANVGCFVLISLLKEQSVGEVLQADVFV------NRKQVAL 535

Query: 531  QSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASSALIRHTERVLAGVFG 590
            +  ++V +L  L  RF+ +       A+      E  L  ++    L+ +T   L+GV G
Sbjct: 536  ERHLSVEDLASLLHRFINKEEADALQARAKVLGSELQLATRREE--LVDYTRLKLSGVLG 593

Query: 591  ASSAKLVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRL 650
            ++S ++V+ +A + +++ LE+V +IVDEA+++++F+R LLQ  +E+I QGI+VVD  +RL
Sbjct: 594  SASTRMVMNAASRSQQVPLEDVVSIVDEANQIFEFNRELLQSGVENIEQGISVVDADMRL 653

Query: 651  VAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTSHT 710
            VAWN+RY+EL ++P   ++ G PI  ++R N ++G+    +  + V +R+ H+  G+ H 
Sbjct: 654  VAWNKRYIELLDYPKDYVKAGIPIETLLRFNIERGIIVGDEAHELVEKRLAHMRSGSPHH 713

Query: 711  SSRVRADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEK 770
              R   DG+V+E++G  MPGGGFV +FTDIT   +AE++L++ANETLE+RV  RT EL K
Sbjct: 714  FQRTMLDGKVLEIRGQAMPGGGFVSTFTDITAHIQAEKALQLANETLEKRVESRTRELAK 773

Query: 771  LNKQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHI 830
                   A   +E  + SK+RFLAA SHDLMQP NA  LF   L +     E++ LA HI
Sbjct: 774  -------AKAEAEAANSSKTRFLAAASHDLMQPFNALTLFTEMLKQRVTSTELKDLATHI 826

Query: 831  ESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVP 890
            E++L   E L+SDL++ISRL+S  +      FA+ D+LS L  EF  L+A+QG+ FS   
Sbjct: 827  EASLNVVESLLSDLVEISRLDSSSLKTEQSQFALNDLLSTLVNEFKVLSAEQGIDFSYQL 886

Query: 891  SLLWVHSDPKLLRRVIQNFLTNAFRYNPNG--------------------------KVIL 924
            S   V SD +LLRR+IQNFL+NAF Y+P G                          KV+L
Sbjct: 887  SSCLVQSDQRLLRRIIQNFLSNAFHYSPAGAVNRQTPLSLNASAALPKLSQADFVPKVLL 946

Query: 925  GVRRVATGQVRIDVWDNGIGIEQDKQQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLG 984
            GVRR+    + I VWDNG GI QDKQQ IF EF R  Q R   GLGLGLAI   IA +LG
Sbjct: 947  GVRRL-EHSLLIQVWDNGPGIPQDKQQAIFGEFERLEQTREIPGLGLGLAICDRIAKLLG 1005

Query: 985  HHISMRSWPGQGSVFSITLDR--AQPMPSSLTQTVAMVNEK--GSELQHLRVLCVDNEPD 1040
              I++ S  G+G+ FS+ + R  AQ  PS+ +  V + +E+   ++  ++ VL +DN+  
Sbjct: 1006 LKIALHSEVGKGTCFSVEVPRVFAQAKPSNPSNVVKLRSEEEGANDSFNISVLVIDNDEL 1065

Query: 1041 ILVGMRDLLERWGCEVKTATDIHGSLKALEGQWIPDVILSDYRLDNGRTGLEVLQQCRLR 1100
            +L  +  LL  WGC V TA D   + + L  Q +P +I++DY LD+ + G++++Q   L 
Sbjct: 1066 MLKAISSLLLGWGCHVLTARDKASAEQQLTQQVLPKLIIADYHLDDDQNGVDLVQS--LL 1123

Query: 1101 LGDCFAG-----VIISADRNPDILDGIESSGFRFMAKPIKPLKLRALLNSLS 1147
                F+      +I SAD +  +     S+ F F+ KP+K   L+ L+  LS
Sbjct: 1124 THPVFSSQRPTCIICSADPSESVRQHTSSAQFSFVRKPVKATALKRLIKQLS 1175