Pairwise Alignments

Query, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1146 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella sp. ANA-3

 Score =  921 bits (2381), Expect = 0.0
 Identities = 513/1155 (44%), Positives = 749/1155 (64%), Gaps = 32/1155 (2%)

Query: 5    LVIPVSLAYLGVLFLIAWYGDRQTRWLAN----WRPWIYSLSIAVYCTSWTFYGTVGQAS 60
            +V  +++ Y+ +LFL+AW  +R   W +      +  IY LS+AVYC+SW+F GTVGQ++
Sbjct: 6    VVAVIAICYVSLLFLLAWGAER---WFSGVTKKLQVGIYGLSLAVYCSSWSFLGTVGQSA 62

Query: 61   VNPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVTVI 120
             + WSF+PI+I PI++F  G+ +L +++L++K ++ITS+ADFIAARYGKSQ LA  VT+I
Sbjct: 63   NDFWSFIPIFIGPIIIFTLGFGMLRKMVLVSKAQNITSVADFIAARYGKSQTLAAIVTLI 122

Query: 121  AVLGILPYIALQLRGITMGLNIVAPDLMTVYGYQESHVSWFVVLALALFTMLFGTRHIDN 180
            A+ GI+PYIALQL+ +   LN+  P    + G     +   +   LA+F +LFGTR +D 
Sbjct: 123  ALFGIMPYIALQLKAMVFSLNLFQPADDPLNGIT---IPLLITALLAIFAILFGTRKLDA 179

Query: 181  TEHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG---LELSTIAASTYQAPNWPTL 237
            TEH+ GMM+AIAFES+VKL AFL VG+ I++  +   G    + S  A   Y  P    L
Sbjct: 180  TEHNPGMMLAIAFESLVKLAAFLLVGIVISFGVFDGFGDIWQQASEKALINYPNPRIEAL 239

Query: 238  LIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFVLPIAWTGQGLL 297
            +   L+ M A +C+PRQFH MVVE      L   RWLFP+YL L  LFV P+A  G+ +L
Sbjct: 240  MPELLVGMAAFLCMPRQFHVMVVECADESVLSKGRWLFPLYLALFGLFVGPLALAGKVIL 299

Query: 298  PNT-SPDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIMVSNDLVMPLLLR 356
             ++ + DT+VI+LP+      +A++A LG  SAA+GMVIV+ + +++MVSN+ ++P++LR
Sbjct: 300  GDSVAADTYVINLPLALDHPLLAVIALLGTLSAATGMVIVAVVTISVMVSNEWLVPVMLR 359

Query: 357  RMRLSQRTHRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSAIGFLSFSAITQFAP 416
               + ++    FS +L+  RR  I+++L   +G YL L    SLS +G LSF A  Q AP
Sbjct: 360  TGNIREKNFSQFSQMLLNARRLAIVIILGLGYGSYLALADSDSLSHLGMLSFGAFAQLAP 419

Query: 417  AIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNVLLWVITPPDWLVAL 476
            A+ GG+YW+ GNR GV++GL+VGF LW   ++S  +        NV   + +  D L A+
Sbjct: 420  ALVGGLYWKHGNRAGVFLGLSVGFGLWFYIMLSGMN-----DGQNVATLLSSNIDLLDAI 474

Query: 477  GLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFVGTPLPENENMSLYQSRVTV 536
                 D   L ++  N  CYI  S+  RA ++ER+QA+AFV +P     N +     ++ 
Sbjct: 475  TPNVRD--ALTALFANIACYILGSIWFRAGVAERIQASAFV-SPGKLKNNANKKNGPISQ 531

Query: 537  GELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASSALIRHTERVLAGVFGASSAKL 596
             +L +LASRFV  TR   +F+++ ++  ++   ++ A+  LI HTER+LAGV GASSA L
Sbjct: 532  QDLLILASRFVSPTRAYESFSRFSTEAVKSDSWHKAATPELIAHTERLLAGVLGASSASL 591

Query: 597  VLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQR 656
            V+ S LQGR + L+EV ++VDEAS     S+ +L+GAIEH  +G++V+D  L LVAWN +
Sbjct: 592  VMDSVLQGRDLALDEVFSLVDEASSKIMLSQDMLRGAIEHAYEGMSVIDSDLNLVAWNYK 651

Query: 657  YLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTSHTSSRVRA 716
            Y+EL+++P G +Q G PI +VIR NA +G CG GD E  V +RV H+  GT HTS R R 
Sbjct: 652  YVELYQYPEGFLQQGMPIGEVIRFNAARGYCGEGDIESQVEKRVQHMRNGTPHTSERQRK 711

Query: 717  DGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQLV 776
            DG+VI++QGNPMP GGFVM+FTDIT +RE E++L  ANETLE RV +RT EL  LN +L+
Sbjct: 712  DGKVIKIQGNPMPDGGFVMTFTDITQYREQERALLEANETLESRVKERTYELAMLNSELL 771

Query: 777  TATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAK-EAEVQKLAHHIESALG 835
             A  + E  + SKSRFLAAV HDLMQPLNAARLF +SLS+    + E +    H+ S+L 
Sbjct: 772  EAKAQEEMANASKSRFLAAVGHDLMQPLNAARLFTASLSQYPNLDREARTTLSHVNSSLK 831

Query: 836  AAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVPSLLWV 895
             A +L++DLLDIS+L+SG ++++   FAI ++L+ L+ EF A+AA   ++F +VP    V
Sbjct: 832  TAGELLTDLLDISKLDSGMVEVNRRDFAISELLNGLSVEFEAMAADNQIRFKMVPCSATV 891

Query: 896  HSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDKQQEIFE 955
            +SDP LLRRV+QNFLTNA+RY   G+V+ G R   + ++ I V D G GI++ + +EIF+
Sbjct: 892  NSDPSLLRRVLQNFLTNAYRYARGGRVLFGCRHRGS-ELEIQVLDTGCGIDEHETREIFK 950

Query: 956  EFNRGGQVRSD--QGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQPMPSSL 1013
            EF R    RS    GLGLGLAI+  I+ VL H I + S  G+GSVFSI++    P+  ++
Sbjct: 951  EFKRLNNPRSKSVSGLGLGLAIADRISRVLNHSIQVSSQLGRGSVFSISV----PLGETV 1006

Query: 1014 TQ-TVAMVNEKGSELQHLRVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKALEGQ 1072
             Q  V  +      L  ++VLC+DNE  IL G+  LL RW CEV  A D+  +   L  +
Sbjct: 1007 RQPQVKALPSLLQPLSGIKVLCIDNEEAILAGLESLLSRWQCEVICAKDLADARIKLGLK 1066

Query: 1073 WI-PDVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGFRFMA 1131
             + PD++L+D+ LD+G+ G++ +   R   G    G++I+A+   ++++ ++  G+ +MA
Sbjct: 1067 GVAPDIVLADFHLDDGQNGVDAMDGIRALYGKELPGILITANTRKELVEDVQRRGYHYMA 1126

Query: 1132 KPIKPLKLRALLNSL 1146
            K IKP  LRAL++SL
Sbjct: 1127 KMIKPAALRALISSL 1141