Pairwise Alignments

Query, 607 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., Predicted signal-transduction protein containing cAMP-binding and CBS domains from Pseudomonas stutzeri RCH2

 Score =  181 bits (459), Expect = 8e-50
 Identities = 143/633 (22%), Positives = 271/633 (42%), Gaps = 43/633 (6%)

Query: 4   KFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVT-HLHILIKGTVEERSPD 62
           +F  +  PFN++       L    ++ ++ + D +I     V  H +I+ +G V  + P 
Sbjct: 24  EFLRKYAPFNQMEPAHLTFLVENCELRFYAEGDCIISPDDGVVQHFYIVKQGRVHGQRPH 83

Query: 63  ----GKEVFAHYANDDLFDVRAMF-EELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFA 117
               G +        + F + A+  E  ++  ++A EDT  +LL K  F++L   +  F 
Sbjct: 84  TAKRGTDTTFEVIVGECFPMAALMGERATRTAHLAAEDTFCFLLNKPAFVKLVSSSPVFR 143

Query: 118 AYFDNNLAKRQELIEAAAQQKNIAEF-----ILTKVDRSIYHPPFILSPEQPIHSVTQQL 172
            +    ++   +L+   AQ + +        + T +     H P    P +P++     +
Sbjct: 144 DFAMRGVSSLLDLVNQQAQMRAVESLGEQYSLETSIGELALHHPVSCLPSRPLNEAVAMM 203

Query: 173 KERGIDAALVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLH 232
           ++  + + ++              HP  I T  ++  A+      L  P+ +  T    +
Sbjct: 204 QQENVGSIVI---------VDEALHPQGIFTLRDLRRAIGTGTTDLSQPISQFMTHDPFY 254

Query: 233 VDEGDFLFNAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASI 292
           +      F+A + MT + I  V V       G++S   + S        L   I  A  +
Sbjct: 255 LPPDATAFDAAIAMTERHIAHVCVVENGLLQGVISERDLFSLQRVDLVHLAQTIRHADRV 314

Query: 293 DELALAANKQRELVESLMSRGVRTRFVMELIAAVNEQIIEKAFELVV-----PPALHDQC 347
           D L +  ++  +LV+++++ G  +  +  ++  +N+  + +  EL +     P       
Sbjct: 315 DALVVIRSRIAQLVDNMLAHGASSTQITHIVTLLNDHTVCRVIELAIEHMGDPGVPFTWL 374

Query: 348 CLVVLGSEGRGEQILKTDQDNALIIQ--DGLEWHQCQ----PIMETLTHTLLQLGYPLCP 401
           C    GSEGR EQ L TDQDN ++ +  D  E    +    P+ E +   L   G+ LC 
Sbjct: 375 CF---GSEGRQEQTLYTDQDNGILFEAADAAEAAHIRGRLLPLAERINRDLDTCGFSLCK 431

Query: 402 GKVMVNNPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQ 461
           G +M +NP+   S+ +W R  + +V+ A PE ++   I+ D  ++ G       ++  L 
Sbjct: 432 GNIMASNPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFDLRSIWGPSEGCEQLRRDLL 491

Query: 462 HLMAGQELILAEFTRPALNFSVPLTLFGNVKSSKQG-----IDIKQGGIFPIVHGVRALS 516
             + G  L        AL    P+  F +   +++G     +D+K  G+ P V G R L+
Sbjct: 492 DEIKGNSLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDTLDLKVQGLTPFVDGARLLA 551

Query: 517 LEHAIDANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRL----AQQLGNQHSTNQL 572
           L + I   NT +R+  LV+K V+E++ G    EA+    + R+     Q       +N+L
Sbjct: 552 LSNDIGTCNTLERLRKLVEKGVIEKKDGAAYEEAYHFIQQTRMQHHQQQARDELPYSNRL 611

Query: 573 DFKQLDRTERDLLRHSLHVVKKFKQWLGYHYQI 605
           D   L+  +R +LR S    ++ +  L   YQ+
Sbjct: 612 DPDTLNVLDRRILRESFRQAQRLQASLAVRYQL 644