Pairwise Alignments

Query, 607 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  355 bits (912), Expect = e-102
 Identities = 208/610 (34%), Positives = 327/610 (53%), Gaps = 21/610 (3%)

Query: 5   FNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVTHLHILIKGTVEERSPDGK 64
           F+    PF+ L   ++ +L+   D+AYF   + L     P   L +++KG V ER  +G 
Sbjct: 4   FDFTISPFDLLAPAERDKLQGGADIAYFTAGERLTGPDRPGDALFVVMKGLVAER--EGD 61

Query: 65  EVFAHYANDDLFDVRAMFEELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYFDNNL 124
           ++   +   D     A+          A E+T+++++P+ + L L   N  F  +F  +L
Sbjct: 62  DLLTVHGAGDCVGALALIHGTPALICEAQEETIAHVIPRQLVLDLCRSNAAFERFFATSL 121

Query: 125 AKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILSPEQPIHSVTQQLKERGIDAALVEL 184
             R          + +A F++ KV  +  HPP  +S    +      +K     + LV  
Sbjct: 122 GDRLASHAQTRHLRGVAGFMVAKVGEAYLHPPIFVSGTLGLRDAALLMKRHRATSLLVT- 180

Query: 185 HPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLFNAMV 244
             +D R+         +++ +++    ++  +PL TPV   ATF  + VD  DFLFNA V
Sbjct: 181 -GADGRVG--------VLSGSDLREWAIIREQPLSTPVEACATFDTVFVDVDDFLFNAQV 231

Query: 245 MMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELALAANKQRE 304
           +MTR  I+R+ V      +G+L +I +L   S+H+H++ L I RA ++D+LALAA     
Sbjct: 232 LMTRHGIRRLPVRRDGAVIGVLEMIDLLGYMSSHAHLVALRIDRADTLDDLALAAQALDP 291

Query: 305 LVESLMSRGVRTRFVMELIAAVNEQIIEKAFELVVPPALHDQCCLVVLGSEGRGEQILKT 364
           L++ +   GVR R V  +++ ++ ++  K F L+  P +   CCLVV+GSEGRGEQ+ KT
Sbjct: 292 LIQGMGGSGVRLRDVARMVSDLSRKLQRKLFSLIADPEIAQSCCLVVMGSEGRGEQLAKT 351

Query: 365 DQDNALIIQDGLEWHQCQPIMETLTHTLLQLGYPLCPGKVMVNNPKWVRSQSDWKRTLTD 424
           DQDNALII+DG++    + +    T  +L  GYP CPG +MV+NP W +S+S  +  +  
Sbjct: 352 DQDNALIIKDGIDPESLRGLCNRFTEAMLTFGYPPCPGGMMVSNPAWAKSESALRDDVYG 411

Query: 425 WVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQELILAEFTRPALNFSVP 484
           W+ +      +++A F DA AVAG+ A+LA +K  L   + G    L+ F RP L F  P
Sbjct: 412 WITSPSEIGFLNLAAFIDAEAVAGDGAMLARLKTLLFARLRGNSAFLSLFARPILAFDTP 471

Query: 485 LTLFGNV----KSSKQGIDIKQGGIFPIVHGVRALSLEHAIDANNTFDRIEALVKKRVLE 540
           L  F  +     S+  G+D+K+GGIFPIVHGVRAL+LEHAI   +TFDRIEAL     L+
Sbjct: 472 LGFFHQLLIDHGSAGGGLDVKKGGIFPIVHGVRALALEHAITETSTFDRIEALRGLGALD 531

Query: 541 QETGDNLSEAFKLFLKLRLAQQLGNQH-----STNQLDFKQLDRTERDLLRHSLHVVKKF 595
                +L EA +  + LRL  +LG        +   +    L R++   LR +L +VK+F
Sbjct: 532 DGVATDLVEALQALMALRLEARLGRSPQDGAVADTLIRAGSLTRSQHTALRDALLIVKRF 591

Query: 596 KQWLGYHYQI 605
           K  L +H+ +
Sbjct: 592 KALLTHHFHL 601