Pairwise Alignments

Query, 607 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  171 bits (432), Expect = 1e-46
 Identities = 150/608 (24%), Positives = 268/608 (44%), Gaps = 37/608 (6%)

Query: 4   KFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLI--DAQHPVTHLHILIKGTVEERSP 61
           +F  Q  PF+ L+ +   +   AL V Y+ +  V +  D +HP   L+I+  G  E R  
Sbjct: 11  QFLGQLTPFDSLSEQTLERCCRALTVGYYSRSSVYVPLDEEHP--QLYIVRSGAFEVRGE 68

Query: 62  DGKEVFAHYANDDLFDVRAMFE-ELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYF 120
           DG ++     + D F   ++   E   ++   LED L Y L    F QL  ++ EF  +F
Sbjct: 69  DG-DLIDRLGDGDFFGFPSLLSGEKVSNRVQILEDGLVYHLDPETFNQLRSESREFDRFF 127

Query: 121 DNNLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILSPEQPIHSVTQQLKERGIDAA 180
           +   AKR    +   + K +      +V   +   P  L     +    + +++  + + 
Sbjct: 128 NRAFAKRLRH-QGRFKAKELGS--TNRVSSLMSKQPLCLDINASVSDAARLMRDNRVSSV 184

Query: 181 LVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLF 240
           L+     + +LA        I+T  ++ + V+ E      PV +  T     +     +F
Sbjct: 185 LII---DNQKLA-------GILTDRDLRNRVLAESLDGSLPVHQAMTVTPTTLSANALVF 234

Query: 241 NAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELALAAN 300
            AM++M++  I  + +      +G+++   IL   S+   +L   I R   ++ L   + 
Sbjct: 235 EAMLLMSQHNIHHLPIMDEGHPIGVITSTDILRGQSSQPLLLIGEIERQHDLESLIHVSK 294

Query: 301 KQRELVESLMSRGVRTRFVMELIAAVNEQIIEKAFEL---VVPPALHDQCCLVVLGSEGR 357
           +   L+++L+S   R   +  ++ +V + +  +   L   ++  A    C L   GS+GR
Sbjct: 295 QIPLLLQNLISADARAEEIGRVLTSVTDALTRRLIVLNQQILGKAPMPFCWLA-FGSQGR 353

Query: 358 GEQILKTDQDNALIIQDGLEWHQCQPIMETLTHTLL----QLGYPLCPGKVMVNNPKWVR 413
            +Q   +DQDN L++   ++ H  Q   E LT  +     + GY  CPG +M  NPKW  
Sbjct: 354 QDQAACSDQDNGLLLAHEMDEH-AQGYFEALTKAVCAGLDRCGYVYCPGDIMAQNPKWRM 412

Query: 414 SQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQELILAE 473
           + + W++   +WV+   P+ +M  +IF D   V G  +L   +++ +       ++ LA 
Sbjct: 413 TLAQWQQKFANWVEHPEPKALMHASIFFDMRCVYGPSSLFEGLQSQVLESTKDNDIFLAG 472

Query: 474 FTRPALNFSVPLTLFGNVKSSK-----QGIDIKQGGIFPIVHGVRALSLEHAIDANNTFD 528
               AL  S PL  F      +     +GID+K  G   I    R  +L   I   NT  
Sbjct: 473 MAGNALQVSPPLGFFKKFVLERDGQEVKGIDLKHKGSALINDIARVYALSAGISEVNTAK 532

Query: 529 RIEALVKKRVLEQETGDNLSEAFKLFLKLRLAQQ----LGNQHSTNQLDFKQLDRTERDL 584
           RI  L+++ ++ ++   NL++A +    +RL+ Q      NQ  TN L  +QL    R  
Sbjct: 533 RIRLLMEQNIINRKDALNLADAHEFIAHMRLSNQGYQYTHNQPLTNYLMPQQLSSLVRHQ 592

Query: 585 LRHSLHVV 592
           LR +  VV
Sbjct: 593 LRDAFKVV 600