Pairwise Alignments

Query, 607 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  204 bits (520), Expect = 7e-57
 Identities = 150/619 (24%), Positives = 284/619 (45%), Gaps = 27/619 (4%)

Query: 5   FNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVTHLHILIKGTVEERSPDGK 64
           F  Q PPFN L  E    +   +++AY+RQ   +I     +  L+++  G VE     G 
Sbjct: 11  FLSQYPPFNALPDEVVAMVSHHVEIAYYRQDTPIIHFGDQIHDLYMVRSGVVEVYRRKG- 69

Query: 65  EVFAHYANDDLFDVRAMFEELS-KHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYFD-N 122
           E++    + DLF    +      +    A+EDTL Y +P++IF QLY+Q   FA + +  
Sbjct: 70  ELYNRLDSGDLFGQMGLLTNNKVRFPVKAIEDTLVYCIPEAIFQQLYDQYDTFADFVEVE 129

Query: 123 NLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILSPEQPIHSVTQQLKERGIDAALV 182
           + A+ ++ +   ++Q ++     +KV   +     ++   + I      + +  + A LV
Sbjct: 130 DSARLRQTVSNTSEQNDLTT---SKVKTLLTRDAPVIHKGESIQQAAIMMAQENVSALLV 186

Query: 183 ELHPSDPRLAHNHAHPY-AIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLFN 241
            + P           P   I+T  ++   V+ EG    T +  + +  V+ +D   +++ 
Sbjct: 187 -IDPDVLEDEDGDTSPLLGIITDRDLCTRVVAEGIDPATELAGVVSTEVITLDHNAYVYE 245

Query: 242 AMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELALAANK 301
           AM+ M R  +  + VC G + +G++    I+   S +S +L  +I +  S++ELA  A +
Sbjct: 246 AMLTMLRYNVHHLPVCKGRKPIGIIEATDIVRYESQNSLLLVSSIFQQQSLEELAALATQ 305

Query: 302 QRELVESLMSRGVRTRFVMELIAAV----NEQIIEKAFELVVPPALHDQCCLVVLGSEGR 357
            ++    L++    +  V   ++ +     ++I+E A E + PP +    C + LGS GR
Sbjct: 306 VKDSFVRLVNEDANSHMVGSAMSVIGRSFKQRILELAEEKLGPPPI--PYCFLALGSMGR 363

Query: 358 GEQILKTDQDNALIIQDGLEWHQCQPIMETLTH----TLLQLGYPLCPGKVMVNNPKWVR 413
            EQ++ TDQDNA+I+ D  +  +       L +     L   GY  C G +M  NP W  
Sbjct: 364 DEQLIVTDQDNAIILDDDFDKAKHDDYFSQLANFVCDGLDSCGYSYCTGDIMATNPMWRM 423

Query: 414 SQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQELILAE 473
           ++ +W+    DW+    P+ +++ +IF D   V G       +   +          LA 
Sbjct: 424 TRKEWEACFADWIDDPNPKALLNASIFFDLDGVYGRLKWAEQLNGFIVRRARKNNRFLAC 483

Query: 474 FTRPALNFSVPLTLFGNVKSSKQG-----IDIKQGGIFPIVHGVRALSLEHAIDANNTFD 528
             R ALN + PL  F +    K G     I++K+ G  P+   +R  +L     A N+F+
Sbjct: 484 LARNALNRTPPLGFFKDFVMEKDGRHNNSINLKRRGTAPLADLIRVHALAVGSRARNSFE 543

Query: 529 RIEALVKKRVLEQETGDNLSEAFKLFLKLRLAQQLGNQHS----TNQLDFKQLDRTERDL 584
           R++ ++   +L +  G++L +A +    +R+  Q  +        N ++ + L   ER  
Sbjct: 544 RLDDIIDANILPKGRGEDLRDAMEFISMVRIRHQALDVEQGIDPDNNIEPEHLSDFERRN 603

Query: 585 LRHSLHVVKKFKQWLGYHY 603
           L+ +  ++   + +L + Y
Sbjct: 604 LKDAFQILSNAQNFLKFRY 622