Pairwise Alignments

Query, 607 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score =  154 bits (389), Expect = 1e-41
 Identities = 145/615 (23%), Positives = 263/615 (42%), Gaps = 46/615 (7%)

Query: 4   KFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVTHLHILIKGTVEERSPDG 63
           +F   + PF+ L  E   +   ++ V Y+ +    +        L+++  G  E R P+G
Sbjct: 11  QFLTSTAPFDTLPNETILRCAKSVTVGYYSKASGFVKFDADAPKLYLVRSGAFEVRDPEG 70

Query: 64  KEVFAHYANDDLFDVRAMFE-ELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYFDN 122
             V    A  + F    +   E   ++   LED+L Y LP+++F QL  ++  F  +F  
Sbjct: 71  VLV-DRVAEGEFFGFSTLLSGEKVVNRVAILEDSLVYHLPQALFDQLRSESRHFDKFFTR 129

Query: 123 NLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILSPEQPIHSVTQQLKERGIDAALV 182
             AKR    EA  + K++     +++   +   P ++     +      ++   + + LV
Sbjct: 130 AFAKRLRH-EARFKAKDLTT--TSRISTLMSSSPIMIDAHASVTQAALLMRNSRVSSLLV 186

Query: 183 ELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLFNA 242
                      NH     I+T  ++ + V+  G      V +  T   + +     +F A
Sbjct: 187 ---------TDNHKL-VGILTDKDLRNRVLAAGLDGRIAVHQAMTTSPISISSNALIFEA 236

Query: 243 MVMMTRQRIKRVMVCLGN-----QAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELAL 297
           M++M+   I  + +         +A+G+++   IL    +   +L   I R   +  L  
Sbjct: 237 MLLMSEHNIHHLPIIDEQNTEEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLASLIS 296

Query: 298 AANKQRELVESLMSRGVRTRFVMELIAAVNEQIIEKAFEL------VVPPALHDQCCLVV 351
            + +   L+++L+S   R   +  ++ +V + +  +   L        P A     C + 
Sbjct: 297 VSKQIPLLLQNLISADARAEEIGRVLTSVTDALTRRLIVLNQQILGEAPMAF----CWLA 352

Query: 352 LGSEGRGEQILKTDQDNALIIQDGLEWHQCQPIMETLTHTLL----QLGYPLCPGKVMVN 407
            GS+GR +Q   +DQDN L++ + ++ +  +   + LTH +     Q GY  CPG +M  
Sbjct: 353 FGSQGRQDQAACSDQDNGLLVAEEMDDY-AKGYFDALTHAVCAGLDQCGYAFCPGNIMAQ 411

Query: 408 NPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQ 467
           NP W  S ++W++    WV    P+ +M  +IF D  +V G ++L   ++  +       
Sbjct: 412 NPLWRMSLNEWQQVFEKWVVTPEPKALMHASIFFDMRSVFGPQSLFDALQDKVLAQTKDN 471

Query: 468 ELILAEFTRPALNFSVPLTLFGNV-----KSSKQGIDIKQGGIFPIVHGVRALSLEHAID 522
           ++ LA  T  +L  S PL  F         S  +GID+K  G   I    R  +L   I 
Sbjct: 472 DIFLAGMTGNSLVESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIK 531

Query: 523 ANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRLAQQLGNQHS-----TNQLDFKQL 577
             NT  RI AL+   +L ++   NL++A +    +RL+ Q G QH+     +N L    L
Sbjct: 532 EVNTAKRIRALMDANILNRKDALNLADAHEFIAHMRLSNQ-GYQHTQGLKISNYLLPGHL 590

Query: 578 DRTERDLLRHSLHVV 592
               R  LR +  VV
Sbjct: 591 SSLVRHQLRDAFKVV 605