Pairwise Alignments

Query, 331 a.a., tRNA dihydrouridine synthase DusB from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., tRNA-dihydrouridine synthase A (RefSeq) from Shewanella loihica PV-4

 Score = 78.6 bits (192), Expect = 2e-19
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 23  VAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNR---MVHEGESGIRSVQ 79
           +APM   TDR +R     Y A +  SE++     +   A    +   + +  E    ++Q
Sbjct: 16  IAPMLDWTDRHYR-----YFARLMSSELLLYTEMVTTGAIIHGKGDYLAYNQEEHPLALQ 70

Query: 80  IAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAVVN 139
           + GS+P+ +A+ A+ + E G   +++N+GCP+ +V     G+ L+  PD++   + A+  
Sbjct: 71  LGGSNPEDLAKCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAQCVAAMNE 130

Query: 140 AVNVPVTLKTRTGWDTDN--KNCLSIAQLAEDCGIQALALHGR--------TRACMYKGE 189
            V++PVT+KTR G D  +  +            G     +H R         +      E
Sbjct: 131 VVDIPVTVKTRIGIDEQDSYEFLTEFVDKVSAAGCDTFIIHARKAWLQGLSPKENREIPE 190

Query: 190 AEYDSIKAVKAAV-SIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQH 248
            +YD +  +K     + +  NG + + E+    L+    D +M+GR A   P++  ++  
Sbjct: 191 LDYDRVYRLKQDYPQLSISINGGVKTLEECGEHLKQ--LDGVMVGREAYQNPYLLAQVDQ 248

Query: 249 FLEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRR 307
            L  G   P L    V + M+ ++   H   G  L      +H++   Q    + A+RR
Sbjct: 249 QL-CGLDKPVLSRDAVLENMIPYIEK-HLVSGGRLNH--ITRHMTGLYQGEAGSRAWRR 303